PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000718.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 224aa MW: 24678.8 Da PI: 8.7416 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.7 | 3.4e-19 | 6 | 55 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr++ +g+Wv+eIr+p kr++lg+f taeeAa+a+++a+ ++g Itr_sc000718.1_g00009.1 6 KFRGVRQRQ-WGSWVSEIRHP-----LlkKRIWLGTFETAEEAARAYDQAAVLMNG 55 89****999.**********8.....335*********************977765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.79E-33 | 6 | 65 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-21 | 6 | 64 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.918 | 6 | 63 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-11 | 6 | 51 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-32 | 6 | 64 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-39 | 6 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-11 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-11 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MVQSNKFRGV RQRQWGSWVS EIRHPLLKKR IWLGTFETAE EAARAYDQAA VLMNGQNAKT 60 NFPVAKEKSN GGGREAATTP PIPVDVLSAK LKKCCKEPAP SITCLRLDTD GGHIGVWQKK 120 SGKDSASNWL TKIELQGKNS KKTKKKATEE EQTPSPLSSS YCNSWDNIVS PSSSSSLCSS 180 NNSLGISSSD HELIIAEMDD ENRVAMQMVE ELLNWNIPNS SILN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-17 | 2 | 63 | 10 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019173781.1 | 1e-115 | PREDICTED: ethylene-responsive transcription factor SHINE 2-like isoform X1 | ||||
Swissprot | Q9XI33 | 9e-63 | WIN1_ARATH; Ethylene-responsive transcription factor WIN1 | ||||
TrEMBL | A0A484M7D3 | 8e-77 | A0A484M7D3_9ASTE; Uncharacterized protein | ||||
STRING | XP_008466408.1 | 1e-73 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1352 | 24 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11190.1 | 1e-52 | ERF family protein |