PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000712.1_g00020.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRF
Protein Properties Length: 610aa    MW: 64793.2 Da    PI: 8.3835
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000712.1_g00020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.91e-24213257145
                      WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                              d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e+
  Itr_sc000712.1_g00020.1 213 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVES 257
                              79****************************************986 PP
2QLQ61.91.8e-21143179137
                      QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                              ++FT++Q+++L++Q+l+yKy++an+P+Pp+Ll +i+k
  Itr_sc000712.1_g00020.1 143 GPFTPSQWMELEHQALIYKYIIANVPIPPYLLNPIKK 179
                              59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.4E-13143179IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.6E-16144177IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.169144179IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.916213257IPR014977WRC domain
PfamPF088797.3E-21214256IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MDFGGVLDSG VVVACSDTKT ATITVAAATS NALFTAASEA VSDAETKQKW YGSVGFFKQE  60
RTSGANHAAE DDMRGSKMAK TTAAALPRSP FVGSEPHQML SFSSSSSSSP YYPHASFGGN  120
PGYGVAGLSG GNMHGVMSGG VKGPFTPSQW MELEHQALIY KYIIANVPIP PYLLNPIKKA  180
IESAALSSFG LRVNSLGWGG AGGFHLGFSS NTDPEPGRCR RTDGKKWRCS RDAVADQKYC  240
ERHMNRGRHR SRKPVESPSG HHPASGTTTT TAAAAKPMPG ASSTSSAAAA AVAVSGGGAS  300
NNSLAFSHHN QLSNLQLPAA TNPSVSAHHL DRSFLDKEYV GERYQDPTGL SITSPILKDR  360
QYSSIPKDQN PYEESSTLKF GLVCSDSLLS KGSSLVSCRN YGTSEVISDR ENKSQHPIRQ  420
FMDNWPKNQS DRSMVLWPEI DMQQKPDSTQ LSISIPMATS EFTSSISPAN EKLNACPLKL  480
SREIEATQMR LGVGAVINEQ NQRQGNWIPI PWESSMGGPL GEVLHGTNSM TSECKNPSAL  540
NLMTEGWNGN GSPKPASSPT GVLQKAVFYS ISNSSAGSSP RAESNKNTNG ASPSHEILGA  600
TLMNPSLPAL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-43AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019156789.10.0PREDICTED: growth-regulating factor 1-like isoform X2
TrEMBLA0A3Q7G8H80.0A0A3Q7G8H8_SOLLC; Uncharacterized protein
STRINGSolyc04g077510.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.13e-73growth-regulating factor 1