PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000712.1_g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | AP2 | ||||||||
Protein Properties | Length: 613aa MW: 67183 Da PI: 6.8709 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.1 | 1.8e-12 | 268 | 324 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g Itr_sc000712.1_g00016.1 268 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 324 78*******************77776664346655.77******************98 PP | |||||||
2 | AP2 | 46.6 | 8.6e-15 | 367 | 418 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Itr_sc000712.1_g00016.1 367 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 418 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-9 | 268 | 324 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-14 | 268 | 334 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.74E-19 | 268 | 332 | No hit | No description |
PROSITE profile | PS51032 | 17.359 | 269 | 332 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-22 | 269 | 338 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-12 | 269 | 333 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 270 | 281 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-9 | 367 | 418 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.89E-25 | 367 | 428 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-17 | 367 | 428 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.019 | 368 | 426 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-34 | 368 | 432 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-18 | 368 | 426 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 408 | 428 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 613 aa Download sequence Send to blast |
MKMEVSSPSS STTAAMAAQS FHLSPSLCYG VGEASAFHFP LPVMPLKSDG SLCIMQPLSR 60 SHPNGMVPNG SPKLEDFLGG ATMGENHQFG SHEREAMALS LDSIYYHNPN DPQEAARHRG 120 SLDFLQEPQT PHTYFSTLQC HDLYQEPLDG EPKSSHHLAE CVENELKNWV SVGPFGGGQQ 180 PFDHHPTTTT MVGEGGGGMG CNELQSLTLS MSPGSQSSCV TAATARQISP TELECCVAME 240 SKKRASMKVV PKQPVHRKSI DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS CKKEGQTRKG 300 RQGGYDMEEK AARAYDLAAL KYWGPSTHIN FPLENYQKEL EEMKNMTRQE YVAHLRRKSS 360 GFSRGASIYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGVN 420 AVTNFDISRY DVDKIIASNT LPTGEVARRN KEIREPPVEA AAIEYNNIAP PEGGECVQDG 480 RATANASDWN MMLYSSPQQQ NNVSLEALQE KALSIGGYQK PGLGGFSVAL HDVFGNETSQ 540 GVLQQQDESN KMDSHISNPS SLVTSLGSSR EGSPDKTGAS MVFTAKTKFL IPAGNVGAAS 600 MPHLPVYAAW NDT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019156801.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT | ||||
Refseq | XP_019156802.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-156 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A061FFL0 | 0.0 | A0A061FFL0_THECC; Integrase-type DNA-binding superfamily protein | ||||
STRING | EOY15653 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2074 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-153 | AP2 family protein |