PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000706.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family BES1
Protein Properties Length: 328aa    MW: 34994.8 Da    PI: 8.2257
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000706.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822206.29.5e-6421451150
                   DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssa 86 
                              ++++r+ptwkErEnnkrRERrRRaiaaki+aGLR +Gny+lpk++DnneVlkALc+eAGw+ve DGttyrkg++p e+++  g s+
  Itr_sc000706.1_g00009.1   2 TSGTRMPTWKERENNKRRERRRRAIAAKIFAGLRLYGNYHLPKHCDNNEVLKALCNEAGWTVELDGTTYRKGCRPVESTDFLGGST 87 
                              5899********************************************************************************** PP

                   DUF822  87 saspesslqsslkssalaspvesysaspksssfpspssldsislasa..asllpvlsvlslvsssl 150
                              sas++ss+q        +sp++sy++sp+sss+psp+s++ + +as   +sl+p+l++ls+ sss+
  Itr_sc000706.1_g00009.1  88 SASTCSSYQ--------TSPCTSYNPSPASSSMPSPASSSYVANASVegNSLIPWLRNLSSGSSSA 145
                              *********........9*******************9999988876789*********9977664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.5E-643139IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MTSGTRMPTW KERENNKRRE RRRRAIAAKI FAGLRLYGNY HLPKHCDNNE VLKALCNEAG  60
WTVELDGTTY RKGCRPVEST DFLGGSTSAS TCSSYQTSPC TSYNPSPASS SMPSPASSSY  120
VANASVEGNS LIPWLRNLSS GSSSASSSKF PHFYLHGGSI SAPVTPPLSS PTGKTPRIRS  180
DWNGPSACVG WGGPHYSFLP SSTPVSPSRQ THPPHSEWLA GIQIPHGGAT SPTYSLVSPN  240
PLGFKAQTLP HHRGSLISTP GQSGTCSPAI AAGFDHTADV PMAEEAVSDE FAFGSNTAGF  300
VKPWEGERIH EDCGPDDLEL TLGSSKTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A1e-22677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B1e-22677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C1e-22677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D1e-22677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7214901e-67KP721490.1 Eucalyptus grandis brassinazole-resistant 1 protein (BES3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019193348.10.0PREDICTED: BES1/BZR1 homolog protein 4-like
SwissprotQ9ZV881e-119BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLA0A2I4GYC31e-142A0A2I4GYC3_JUGRE; BES1/BZR1 homolog protein 4-like isoform X1
STRINGcassava4.1_011523m1e-141(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19842464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-111BES1/BZR1 homolog 4