PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000701.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 326aa MW: 37029.6 Da PI: 6.432 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.7 | 2.6e-18 | 26 | 73 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl Itr_sc000701.1_g00004.1 26 RGPWTVEEDFTLINYIAHHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 73 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 2.8e-16 | 79 | 122 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Itr_sc000701.1_g00004.1 79 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 122 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.818 | 21 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-31 | 23 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-15 | 25 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-16 | 26 | 73 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-22 | 27 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.89E-12 | 28 | 73 | No hit | No description |
PROSITE profile | PS51294 | 23.246 | 74 | 128 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 78 | 126 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-15 | 79 | 122 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-23 | 81 | 127 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MDHVKGGGAY KSVAQQQAED DADLRRGPWT VEEDFTLINY IAHHGEGRWN SLARCAGLKR 60 TGKSCRLRWL NYLRPDVRRG NITLEEQLLI LELHSRWGNR WSKIAQHLPG RTDNEIKNYW 120 RTRVQKHAKQ LKCDVNSKQF KDTMRYLWMP RLMERIQAAA VSSSTTTSAN SDAAAYIPLD 180 ISATSDPPAA GMQQHPTNAA PTIPDYNAAA VNFPSDNSST AASSDSFSDL TDCCGYNFHV 240 TQGANHDYYQ PNNNNHFGYG ESLTSPTGFF NPNLDFQMMD NNNNNNNNNN QQWMDGADVV 300 SDNLWNIEDM WFFQQQFNNN NNNSHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-24 | 23 | 126 | 1 | 103 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019180052.1 | 1e-180 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q9FGY3 | 2e-91 | MYB78_ARATH; Transcription factor MYB78 | ||||
TrEMBL | A0A1S4ASB2 | 1e-125 | A0A1S4ASB2_TOBAC; transcription factor MYB108-like | ||||
STRING | XP_009621085.1 | 1e-126 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1397 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06490.1 | 2e-84 | myb domain protein 108 |
Publications ? help Back to Top | |||
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