PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000699.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | AP2 | ||||||||
Protein Properties | Length: 479aa MW: 52594.3 Da PI: 5.9656 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 6e-17 | 166 | 215 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Itr_sc000699.1_g00006.1 166 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 215 78*******************......55************************997 PP | |||||||
2 | AP2 | 43.9 | 5.9e-14 | 258 | 308 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g Itr_sc000699.1_g00006.1 258 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 308 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.81E-16 | 166 | 224 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.5E-9 | 166 | 215 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.1E-32 | 167 | 229 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.25E-10 | 167 | 222 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.4E-17 | 167 | 223 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.701 | 167 | 223 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-9 | 258 | 308 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.80E-24 | 258 | 318 | No hit | No description |
SuperFamily | SSF54171 | 3.99E-17 | 258 | 318 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.7E-31 | 259 | 322 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-16 | 259 | 316 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.659 | 259 | 316 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-6 | 260 | 271 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-6 | 298 | 318 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MWDLNDSPDQ RREVEEWDEG CCSPVDGDDE KGKGVGSVSN SSSSAALVVE DVSSEDEEDR 60 RKRDGGGGGG GSRIFGFSVV GRSDDNWSSE SEPPPVTRQF FPVDESEMGA TSGDGSPSFP 120 RAAHWVGVKF CQSDPLLTGG GAAGKPLEVS QQPMKKSRRG PRSRSSQYRG VTFYRRTGRW 180 ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGVEADI NFSLEDYEED LKQMSNLTKE 240 EFVHVLRRQS TGFPRGSSKY RGVTLHKCGR WEARMGQFLG KKYVYLGLFD TEIEAARAYD 300 KAAIKCNGKD AVTNFDPSIY EDEQINSTEN SGNAADHSLD LSLGSSSSKQ GGGGGREMVG 360 DHRAQNSSPM QFELNWWHQG GLRPPKEHGG SEIVNDGRRR EGYNETETLQ QLSQTHLNSP 420 GSRKANNNTA SQQQQQWRPH YIGSSTDQSY NTSNNGGSNI IILLLTPATA AASSGFPHY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019182934.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 | ||||
Swissprot | P47927 | 1e-128 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A314L8Z9 | 1e-178 | A0A314L8Z9_NICAT; Floral homeotic protein apetala 2 | ||||
STRING | XP_009589846.1 | 1e-179 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2019 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-117 | AP2 family protein |