PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000697.1_g00018.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 133aa    MW: 15157.7 Da    PI: 7.5088
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000697.1_g00018.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-191364256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkklege 56
                             +y+GVr ++ +g+++AeIrd       + +r++lg+f taeeAa+a+++a+ +++g+
  Itr_sc000697.1_g00018.1 13 KYRGVRKRP-WGKFAAEIRD----SarQGARVWLGTFNTAEEAARAYDRAAYAMRGH 64
                             8********.**********....33334**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.2E-151364IPR001471AP2/ERF domain
CDDcd000184.32E-181372No hitNo description
Gene3DG3DSA:3.30.730.101.3E-311373IPR001471AP2/ERF domain
SMARTSM003805.2E-341377IPR001471AP2/ERF domain
PROSITE profilePS5103223.5511371IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-231372IPR016177DNA-binding domain
PRINTSPR003679.1E-121425IPR001471AP2/ERF domain
PRINTSPR003679.1E-123753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MRENERESGG EIKYRGVRKR PWGKFAAEIR DSARQGARVW LGTFNTAEEA ARAYDRAAYA  60
MRGHLAILNF PEEYNLPRTS SHFYSASSAS ASASAASSSS RQEREVLEFE YLDDKVLEEL  120
LDCDKEENRK KRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-381313214130Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191292.13e-56PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC51e-43ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2G9I9T02e-57A0A2G9I9T0_9LAMI; Uncharacterized protein
STRINGSolyc03g005500.1.14e-55(Solanum lycopersicum)
STRINGPGSC0003DMT4000348714e-55(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-32ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]