PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000694.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 338aa    MW: 37302.4 Da    PI: 4.3694
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000694.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.3e-20118168155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              ++++GVr+++ +g+W+AeIrdp     + +r++lg+f taeeAa  +++a+ +l+g
  Itr_sc000694.1_g00005.1 118 TKFRGVRQRP-WGKWAAEIRDPL----SrRRVWLGTFNTAEEAAMVYDNAAIQLRG 168
                              69********.**********84....34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.75E-31118175No hitNo description
PfamPF008475.3E-13118168IPR001471AP2/ERF domain
SMARTSM003807.9E-37119182IPR001471AP2/ERF domain
PROSITE profilePS5103223.446119176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-30119176IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22119176IPR016177DNA-binding domain
PRINTSPR003672.1E-10120131IPR001471AP2/ERF domain
PRINTSPR003672.1E-10142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEEEEGMLGT RVKYSEHKRL TTTVRHLPEM NAGLPRVVRI TVTDSDATDS SGDEGEGEGE  60
GGLFWRRRVK KYVNEVTFEA WGRDDGNGSC NGVVRSGPTA SKRRKKAEMP AGKVENGTKF  120
RGVRQRPWGK WAAEIRDPLS RRRVWLGTFN TAEEAAMVYD NAAIQLRGPD ALTNFSAPTA  180
AAAVKSPPED PKPPQPVDSG YNSGEESHNN QRSPKSVLFF NEEPETSSFL PPPNDAVEMS  240
QDFAVADNIS VPENFPDFSP FDPLFPNDLF KFDNPVPVPV PDVFDVTGLS DMIFEEEWCC  300
DMFIGSSHDT GFGLPALPAD DFFLDYGDIF GSDPLVAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-19116175262ATERF1
3gcc_A5e-19116175262ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019150896.10.0PREDICTED: ethylene-responsive transcription factor CRF2 isoform X2
RefseqXP_019150897.10.0PREDICTED: ethylene-responsive transcription factor CRF2 isoform X3
TrEMBLA0A1J6KL081e-112A0A1J6KL08_NICAT; Ethylene-responsive transcription factor crf2
STRINGXP_009763317.11e-111(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-50cytokinin response factor 2