PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000692.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB_related | ||||||||
Protein Properties | Length: 222aa MW: 25266.1 Da PI: 6.8941 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 7e-17 | 14 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+ll ++++++G g +W++Ia +++ gRt++++k++w+++l Itr_sc000692.1_g00008.1 14 KGAWSEEEDDLLRKCIQKFGEGkwhlvpfraglnRWSLIAGRIP-GRTANDVKNYWHSHL 72 79******************************************.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.224 | 9 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-13 | 9 | 82 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.0E-20 | 9 | 76 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-15 | 13 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-15 | 14 | 72 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.38E-13 | 16 | 72 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MVNSSARSSP RVRKGAWSEE EDDLLRKCIQ KFGEGKWHLV PFRAGLNRWS LIAGRIPGRT 60 ANDVKNYWHS HLKKKVVGMH MTTSSNSSRQ DNNWDDEKSK APQITENTLF RPRPRRFFRT 120 SPAFSTLTGK ANAPLPPHQF QASQSEATPP PDLLMLNNVQ QTNNSIATNL PSETTSVQWW 180 EDLLYDDNEH QGTTDMHQGI IDWTDDGFPI DVDLLTLLDP TN |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY986895 | 0.0 | AY986895.1 Ipomoea trifida isolate GRIF6200-1 anthocyanin gene transcription factor (myb1) gene, partial cds. | |||
GenBank | AY986896 | 0.0 | AY986896.1 Ipomoea trifida isolate GRIF6200-2 anthocyanin gene transcription factor (myb1) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019173384.1 | 5e-97 | PREDICTED: transcription factor MYB90-like | ||||
Refseq | XP_019184336.1 | 5e-97 | PREDICTED: transcription factor MYB90-like | ||||
TrEMBL | Q1JV10 | 1e-95 | Q1JV10_IPONI; R2R3-MYB transcriptional regulator |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66380.1 | 1e-27 | myb domain protein 114 |