PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000691.1_g00017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | FAR1 | ||||||||
Protein Properties | Length: 198aa MW: 22458.6 Da PI: 9.8032 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 41.4 | 4.8e-13 | 57 | 129 | 2 | 77 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwe 77 fY eYA ++GF +r+ +s+ks+r+g+i++r + C g ++++k + + +r r gC a++ +k+ek g+w+ Itr_sc000691.1_g00017.1 57 FYVEYAGRAGFITRVLSSRKSERDGSIISRGLGCR--GIPDTQKIG-NAATVKRDRRREGCAAMILIKREKPGTWV 129 9*********************************7..555555555.5688899999**************99995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-10 | 57 | 129 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MRRFVLFLLL DVQIAVDDSI ERVEFSAGGE VSPSETNRIR EPNEGMTFDS EAAARAFYVE 60 YAGRAGFITR VLSSRKSERD GSIISRGLGC RGIPDTQKIG NAATVKRDRR REGCAAMILI 120 KREKPGTWVD EKDKKIQELT AELRVKKRLS AAYREHLLGI MKDVESHSEH LSSKVQAIRE 180 NLRSLDAERQ ELLTRERP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019167546.1 | 1e-123 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A1S4AQE7 | 7e-89 | A0A1S4AQE7_TOBAC; protein FAR1-RELATED SEQUENCE 2-like | ||||
STRING | XP_009605654.1 | 9e-90 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13099 | 17 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 6e-39 | FAR1 family protein |