PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000680.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRAS

Protein Properties

Length: 500aa MW: 56367.5 Da PI: 4.5891

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000680.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	144.5	1e-44	141	499	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 +lL + Aea ++g+ ela+ + + + ++p g+p++R+a+ + + p+++ ++++s + aa+ +f+++ Itr_sc000680.1_g00005.1 141 HHLLEAYAEATEDGHEELAEVIAKCITGKVNPFGEPIERVAFNLF--------H---------PSEDLQKESSNNFEAAFMAFYQI 209 68899999******************************98543........3.........2333333345666778889 PP GRAS 88 sPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfA 169 P+ +f+h++aN+aIlea+ ++ e+v i+Dfd+++G+QWp+L++a+ +p + l++ ++ ++++ s+ + e+t++rL + A Itr_sc000680.1_g00005.1 210 LPYGRFAHFAANSAILEALPSSaETVTIVDFDMGEGIQWPPLIEAMGPKPIS---LKLISIKTEQEStssSRWRFETTQRRLYDHA 292 ***************99889******************998666...555555555444445999********* PP GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl......sPkvvvvveqe..ad 247 +++g +++ + + ++e+l +e+ r+ + la n++++l ++ +++ ++ e+Lk+ k+l + +vv+++ e + Itr_sc000680.1_g00005.1 293 RQCGQKLQVEEM---TIEELVTETKRTTGKQWLAFNCMFRLPHMAKKQPRSQA--MEFLKIAKELlsssaiPSGIVVFADGEprGN 373 ****9997...99999999999999***********966666655..99999999873222214569*995544 PP GRAS 248 h.nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331 +s + f + + +y +l +s+e+ +p + e+ri +E ++++ i++ + + + + ++ l+e G++ +ls Itr_sc000680.1_g00005.1 374 GdSSRGYTSSFNNQFIHYKSLIESMESYFPVNLaEARIALESLFFSPFICSTSWFHDWQ----ESKIKGTSDNLSETGLQGRKLSM 455 445669********************98779***********998888777....667777899********** PP GRAS 332 kaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaW 373 ++ qak l+++ + r+e +++++++l W++ pL+ vS W Itr_sc000680.1_g00005.1 456 ENLIQAKVLVSEREtAYKVRIEeQKQHEMILEWRGTPLMGVSTW 499 **********4444555545689999************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	20.39	114	478	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.6E-42	141	499	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MMQSVLFQPS WPSHNVQFST PPQTIFCGLY DETYIHSSTV ITTDSSDSPL YSSFAALFPD 60 AFTELTSLQN DTAMDRLESI EFEDFCQWLN NSESEEQPKG DMWSPSLSVV SSEASMVLPS 120 RNTAVTVPGT GMEVDGLTNL HHLLEAYAEA TEDGHEELAE VIAKCITGKV NPFGEPIERV 180 AFNLFHPSED LQKESSNNFE AAFMAFYQIL PYGRFAHFAA NSAILEALPS SAETVTIVDF 240 DMGEGIQWPP LIEAMGPKPI SLKLISIKTE QESTSSSRWR FETTQRRLYD HARQCGQKLQ 300 VEEMTIEELV TETKRTTGKQ WLAFNCMFRL PHMAKKQPRS QAMEFLKIAK ELLSSSAIPS 360 GIVVFADGEP RGNGDSSRGY TSSFNNQFIH YKSLIESMES YFPVNLAEAR IALESLFFSP 420 FICSTSWFHD WQESKIKGTS DNLSETGLQG RKLSMENLIQ AKVLVSERET AYKVRIEEQK 480 QHEMILEWRG TPLMGVSTWM

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MMQSVLFQPS WPSHNVQFST PPQTIFCGLY DETYIHSSTV ITTDSSDSPL YSSFAALFPD  60
AFTELTSLQN DTAMDRLESI EFEDFCQWLN NSESEEQPKG DMWSPSLSVV SSEASMVLPS  120
RNTAVTVPGT GMEVDGLTNL HHLLEAYAEA TEDGHEELAE VIAKCITGKV NPFGEPIERV  180
AFNLFHPSED LQKESSNNFE AAFMAFYQIL PYGRFAHFAA NSAILEALPS SAETVTIVDF  240
DMGEGIQWPP LIEAMGPKPI SLKLISIKTE QESTSSSRWR FETTQRRLYD HARQCGQKLQ  300
VEEMTIEELV TETKRTTGKQ WLAFNCMFRL PHMAKKQPRS QAMEFLKIAK ELLSSSAIPS  360
GIVVFADGEP RGNGDSSRGY TSSFNNQFIH YKSLIESMES YFPVNLAEAR IALESLFFSP  420
FICSTSWFHD WQESKIKGTS DNLSETGLQG RKLSMENLIQ AKVLVSERET AYKVRIEEQK  480
QHEMILEWRG TPLMGVSTWM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-14	148	499	14	374	GRAS family transcription factor containing protein, expressed

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019187541.1	0.0	PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBL	A0A1S3ZG46	1e-176	A0A1S3ZG46_TOBAC; nodulation-signaling pathway 2 protein-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5361	19	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17490.1	2e-20	RGA-like protein 3