PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000667.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | bHLH | ||||||||
Protein Properties | Length: 240aa MW: 26763.6 Da PI: 6.3705 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.8 | 1.3e-10 | 84 | 130 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRd iN++f eL ++l + + +K +K++iL Av+ + sL Itr_sc000667.1_g00004.1 84 KACREKMRRDLINERFLELSSILEPT---RPPKTDKIAILSGAVHVVTSL 130 678**********************9...99*************998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.808 | 79 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.52E-8 | 82 | 135 | No hit | No description |
Pfam | PF00010 | 5.2E-8 | 83 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-12 | 84 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-12 | 84 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.0E-9 | 85 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
METDDSNWLI DYEMMDDISS AVSATASFPS SATIDFSWVS QTANYSSTAT GSAAGQFEET 60 EVCKEARSRK RLKLEACIPS GSNKACREKM RRDLINERFL ELSSILEPTR PPKTDKIAIL 120 SGAVHVVTSL RTEIQKLKES NLEMVEKIHE LKAEKMELRD EKQKLKEDKR KLEQQVNAAA 180 MFAKPAAASF SHPILNLEGQ VAAGKKMMPV VGYPGFAMWQ FMQPTIVDTS QDHVLHPPVA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019192948.1 | 1e-162 | PREDICTED: transcription factor bHLH115-like | ||||
Refseq | XP_019192949.1 | 1e-162 | PREDICTED: transcription factor bHLH115-like | ||||
TrEMBL | A0A0V0HKS2 | 4e-93 | A0A0V0HKS2_SOLCH; Putative transcription factor ILR3-like | ||||
STRING | Solyc07g052670.2.1 | 6e-93 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA950 | 24 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51070.1 | 2e-65 | bHLH family protein |