PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000658.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 252aa    MW: 28346.2 Da    PI: 9.9246
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000658.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.71.1e-11131172351
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                               +GV++  k+ +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  Itr_sc000658.1_g00008.1 131 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 172
                              79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-4130187IPR001471AP2/ERF domain
PfamPF008476.3E-6130173IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-8131175IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-6133177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAMVITSALW KGAARDSIMG MIGISEVIDI ILGLMYTKLG GRSSFIVPFP KFPENGSMPG  60
NYMQNTKLVG SVFSKPSMDV VQLKEETTAL GTSSFSASPP LKEQENAKFP EVKRRKRHRR  120
KHFDNQEPCL MRGVYFKNMK WQAAIKVDKK QIHLGTVGSQ EEAARLYDRA AFMCGREPNF  180
ELSEEEKQEL RKFNWDEFLA MTRSAITSKK TRRRSGVGAR RKSESSPQNS EEGEQQGNGF  240
SASEDADQDT SV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019161297.11e-152PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1
RefseqXP_019161301.11e-152PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1
RefseqXP_019161307.11e-152PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1
TrEMBLA0A1S3Z9Z82e-87A0A1S3Z9Z8_TOBAC; ethylene-responsive transcription factor-like protein At4g13040
STRINGXP_009758059.13e-84(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62462433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.11e-49ERF family protein