PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000654.1_g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 203aa MW: 22547.4 Da PI: 6.4978 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139.6 | 1.1e-43 | 9 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +Ca+Ck+lrr+CakdC++ap+fp+++p+kfa+vhk+FGasnv+k+l+++p ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q Itr_sc000654.1_g00013.1 9 PCASCKLLRRRCAKDCIFAPHFPSDDPHKFAIVHKVFGASNVSKMLQEIPADHRADAVSSLVYEANARLRDPVYGCVGAITYLQNQ 94 7************************************************************************************* PP DUF260 87 leqlkaelallkee 100 ++ql+ +la++++e Itr_sc000654.1_g00013.1 95 VSQLQMQLAVAQAE 108 *********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.464 | 8 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-43 | 9 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MAAGASNSPC ASCKLLRRRC AKDCIFAPHF PSDDPHKFAI VHKVFGASNV SKMLQEIPAD 60 HRADAVSSLV YEANARLRDP VYGCVGAITY LQNQVSQLQM QLAVAQAEIL CIQMQQPPPP 120 PQDSSTTVPS PPQIHLRDAA AADLDEDDDE RRLKSLFLHH QQNNHQCFNN FTPSSDNTVI 180 LHQSFKRAPF FEHDDMVSSL TQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-44 | 5 | 110 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-44 | 5 | 110 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019191783.1 | 1e-104 | PREDICTED: LOB domain-containing protein 12-like isoform X1 | ||||
Swissprot | Q8LBW3 | 3e-69 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A0K9QFW0 | 3e-77 | A0A0K9QFW0_SPIOL; Uncharacterized protein | ||||
STRING | EMJ19714 | 3e-77 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 5e-69 | LBD family protein |
Publications ? help Back to Top | |||
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