PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000653.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB_related | ||||||||
Protein Properties | Length: 294aa MW: 32690.7 Da PI: 6.8578 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.2 | 5e-15 | 14 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 +g WT++Ed++l+ +++q+G g+W+ +++ +Rt++++k++w+++l Itr_sc000653.1_g00007.1 14 KGQWTPDEDKQLLAYIEQYGHGSWRDLPAKAAhlPKRTDNEIKNYWNTHL 63 799*******************99999887777779***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-23 | 5 | 71 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.44E-15 | 8 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.672 | 9 | 67 | IPR017930 | Myb domain |
SMART | SM00717 | 6.8E-13 | 13 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-13 | 14 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.07E-14 | 17 | 63 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MGRSPCCEKV GLKKGQWTPD EDKQLLAYIE QYGHGSWRDL PAKAAHLPKR TDNEIKNYWN 60 THLKKKLSKM GIDPMTHRPK INSSFGSAAN ISHMAQWETA RLEAEARLVR PSKSIASSLI 120 SPYHKPPPPP PPKVPPSLDV LKAWQETWTK PPRTRVSSDG AFLSNSTTHQ SPTTLNFSGQ 180 NLTTLNFSDQ NLTTLNFSDQ NLCYMETPYV HESSIGNPNP TGDDIIPHVA MDPLPELPTF 240 IHGFSELSPE TLTGYLDDNN VVGNYGTADL EDNSRYWNSI LNNLVASPVG SPVF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019170634.1 | 1e-157 | PREDICTED: myb-related protein Hv1-like | ||||
TrEMBL | A0A068TVP9 | 1e-72 | A0A068TVP9_COFCA; Uncharacterized protein | ||||
STRING | XP_008221584.1 | 4e-67 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 8e-49 | myb domain protein 16 |