PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000653.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 309aa    MW: 34976.4 Da    PI: 7.3745
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000653.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-171461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd+ l+ +++q+G g+W + +++ g+ R++k+c++rw +yl
  Itr_sc000653.1_g00005.1 14 KGPWTPEEDKHLLAYIEQYGHGSWQALPEKAGLQRCGKSCRLRWTNYL 61
                             79********************************************97 PP
2Myb_DNA-binding50.54.7e-1667112148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg+++ +E++ ++++++ lG++ W++Ia++++ +Rt++++k++w+++l
  Itr_sc000653.1_g00005.1  67 RGNFSLQEEQSIIQLHAFLGNR-WSAIASHLP-KRTDNEIKNYWNTHL 112
                              89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-25564IPR009057Homeodomain-like
PROSITE profilePS5129415.52961IPR017930Myb domain
SuperFamilySSF466892.3E-3011108IPR009057Homeodomain-like
SMARTSM007171.1E-121363IPR001005SANT/Myb domain
PfamPF002491.2E-151461IPR001005SANT/Myb domain
CDDcd001673.69E-101661No hitNo description
PROSITE profilePS5129423.79662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-2665116IPR009057Homeodomain-like
SMARTSM007178.2E-1666114IPR001005SANT/Myb domain
PfamPF002495.5E-1567112IPR001005SANT/Myb domain
CDDcd001676.82E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MERSPCCEKV GLKKGPWTPE EDKHLLAYIE QYGHGSWQAL PEKAGLQRCG KSCRLRWTNY  60
LRPDIKRGNF SLQEEQSIIQ LHAFLGNRWS AIASHLPKRT DNEIKNYWNT HLKKKLSKMG  120
IDPMTHRPKM GKAANLSHMA QWETARLEAE ARHSKFISSA QNSSSRLPTN NPPPPPKVPP  180
TLDVLKAWQE TWTKPPRTRV SSNVDGGAFV PNATLHQSPT TLNFSDQNLC YMETPYVHES  240
NIGNPNPTRD DIIPQVAMDP LSELPTFIHG FPELSPETLT GYLDDDNVVG NYGTADVEDN  300
SHYWNSIDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019170634.11e-175PREDICTED: myb-related protein Hv1-like
SwissprotQ9LE634e-89MY106_ARATH; Transcription factor MYB106
TrEMBLA0A068TVP91e-106A0A068TVP9_COFCA; Uncharacterized protein
TrEMBLA0A2G9H6Z71e-106A0A2G9H6Z7_9LAMI; Uncharacterized protein
STRINGXP_009792075.11e-103(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.12e-91myb domain protein 16