PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000653.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 248aa    MW: 27631.1 Da    PI: 8.2701
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000653.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.8e-161358148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg+++ +E++ +++++++lG++ W++Ia+ ++ +Rt++++k++w+++l
  Itr_sc000653.1_g00002.1 13 RGKFSLQEEQTIIQLHALLGNR-WSAIAANLP-KRTDNEIKNYWNSHL 58
                             89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-17265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-26362IPR009057Homeodomain-like
PROSITE profilePS5129425.034862IPR017930Myb domain
SMARTSM007176.1E-161260IPR001005SANT/Myb domain
PfamPF002491.2E-151358IPR001005SANT/Myb domain
CDDcd001678.99E-121558No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MRWTNYLRPD IKRGKFSLQE EQTIIQLHAL LGNRWSAIAA NLPKRTDNEI KNYWNSHLKK  60
RLSEMGIDPI THKPKSNPFG SKEAANLRHM AQWETARLEA EARLVRHNST MFGSSLSSPS  120
PPHHVSLLHK PPRNPPPPPL DVLKAWQAAW TTEPPMTAPN PRVSISPPNV YDQSPTTLNF  180
SDQNLVEGST SNMNTFGNPN TTGDDIMSAA MDPLSEFPTF ILPENLSAHC SNGYLDSIVG  240
NCGAFSGW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-1426348109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019170625.11e-129PREDICTED: protein rough sheath 2-like
SwissprotQ9LXF11e-55MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A068TVP92e-70A0A068TVP9_COFCA; Uncharacterized protein
STRINGXP_007158642.12e-69(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.23e-56myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]