PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000640.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 505aa    MW: 57515.8 Da    PI: 4.8117
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000640.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS165.25.4e-511405042373
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                               +lL + Aea+++g+ ela+ +++r++  asp g++++R+a+ + e  ++   +           +++s   s++  +a+++f+++
  Itr_sc000640.1_g00007.1 140 HHLLGAYAEAMENGHEELAEVIVKRIRGKASPLGETLERVAHSLFESTEEDQEG---------YLRQES---SKNFEQAFRAFYQI 213
                              79999*************************************999998888877.........344444...677788999***** PP

                     GRAS  88 sPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172
                               P+ +f+h++aN+aIlea+ ++ e+vHiiDfd+++G+QWp+ ++a+a + + + +lR+T +++++++ ++++eet++rL + A+ +
  Itr_sc000640.1_g00007.1 214 LPFGRFAHFAANSAILEALPNDaETVHIIDFDMGEGVQWPPVIEAMARK-RRALNLRLTSIKPNHESTSNQYEETKRRLYDHAKPF 298
                              *******************99889**********************976.5668*********9999******************* PP

                     GRAS 173 gvpfefnvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvksl......sPkvvvvveqe...a 246
                               ++++++ + ++   ++e+++++ ++   +  la n++++l ++   +++++s+  e+Lk+ k+l      +  ++++++ e   +
  Itr_sc000640.1_g00007.1 299 ALNLQIEEMSVE-ELAIETKTMKNNKgpgKQWLAFNCMFRLPHMA-TNMPQTSQAMEFLKIAKQLlaysetQTGIIIFAHGEsegC 382
                              ********6444.44456777777768999**************8.55666666999***99998333333456888877663366 PP

                     GRAS 247 dhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWre....rleeaGFkpv 327
                              ++ ++++   f ++l +y +l++s+e  +p+   e+ri +E  ++++ i +    e           + W++       ++ ++  
  Itr_sc000640.1_g00007.1 383 NTLTSNYTSFFNKKLVHYKSLLESIEWHFPAILsEARIALESIFIAPCINS----ESWY--------QDWEQnkmrGTCDFQLQRQ 456
                              777889**********************99854499*******87776654....4443........3343310002345666789 PP

                     GRAS 328 plsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373
                              +ls ++   ak l+ + +s  y+v    +++++++l W++ pL+ vS W
  Itr_sc000640.1_g00007.1 457 TLSRENLVLAKELVGERESP-YSVSieeQKQNEMILEWRGTPLIRVSTW 504
                              9****************966.77665456699***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.051113505IPR005202Transcription factor GRAS
PfamPF035141.9E-48140504IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MMQPQLLLQP SWPSSYNVDY STRPRTRLCG LHEDSYVRDN YTRSPLLTTT DSFGVSSVSD  60
FSTLFPDAFT ELSSLQLQND MQILPPDGEF EDVCKWLNIS DSEDGISSEA SFSIAQSSAN  120
RLPAIFPGSG GEVDTQLSLH HLLGAYAEAM ENGHEELAEV IVKRIRGKAS PLGETLERVA  180
HSLFESTEED QEGYLRQESS KNFEQAFRAF YQILPFGRFA HFAANSAILE ALPNDAETVH  240
IIDFDMGEGV QWPPVIEAMA RKRRALNLRL TSIKPNHEST SNQYEETKRR LYDHAKPFAL  300
NLQIEEMSVE ELAIETKTMK NNKGPGKQWL AFNCMFRLPH MATNMPQTSQ AMEFLKIAKQ  360
LLAYSETQTG IIIFAHGESE GCNTLTSNYT SFFNKKLVHY KSLLESIEWH FPAILSEARI  420
ALESIFIAPC INSESWYQDW EQNKMRGTCD FQLQRQTLSR ENLVLAKELV GERESPYSVS  480
IEEQKQNEMI LEWRGTPLIR VSTWM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019161123.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A314KSF51e-172A0A314KSF5_NICAT; Nodulation-signaling pathway 2 protein
STRINGPGSC0003DMT4000685071e-148(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.17e-23GRAS family protein