PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000639.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C2H2 | ||||||||
Protein Properties | Length: 229aa MW: 24931.4 Da PI: 6.8882 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00017 | 62 | 84 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Itr_sc000639.1_g00006.1 62 FSCNYCQRKFYSSQALGGHQNAH 84 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.59E-6 | 60 | 89 | No hit | No description |
PROSITE profile | PS50157 | 11.427 | 62 | 89 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 64 | 84 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MPEGVVEDIS SQNSNDGDEN EEHDDMKPSC DDDGSPELNL LDSLETTAAG GSSSDQGSPR 60 VFSCNYCQRK FYSSQALGGH QNAHKRERTL AKKGQRLGPY FMAAAMAFGH SNHHHQQYYS 120 TMASSSRSLP LHNPLGIHPH SMILKPSSIH SLHERRSRPI ITQQPAVGKL SVPNFHISPP 180 TNMERSSTTL LSPQESATGA GFWAASSSNH LKNNSSRGDL PNLDLSLSL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269|PubMed:24808098, ECO:0000305|PubMed:8980531}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by white light in dark-grown seedlings. {ECO:0000269|PubMed:10794528}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019176817.1 | 1e-127 | PREDICTED: zinc finger protein 1-like | ||||
Swissprot | Q42485 | 6e-29 | ZFP1_ARATH; Zinc finger protein 1 | ||||
TrEMBL | A0A2N9F7G3 | 1e-45 | A0A2N9F7G3_FAGSY; Uncharacterized protein | ||||
STRING | VIT_04s0008g05930.t01 | 4e-45 | (Vitis vinifera) | ||||
STRING | XP_002527314.1 | 4e-45 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5827 | 22 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10970.1 | 1e-32 | C2H2 family protein |
Publications ? help Back to Top | |||
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