PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000630.1_g00012.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 380aa    MW: 42340.6 Da    PI: 4.3049
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000630.1_g00012.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-193483255
                      AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Itr_sc000630.1_g00012.1 34 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 83
                             789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.55E-313390No hitNo description
SuperFamilySSF541713.53E-193491IPR016177DNA-binding domain
PROSITE profilePS5103219.5593491IPR001471AP2/ERF domain
PfamPF008479.1E-143483IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-273490IPR001471AP2/ERF domain
SMARTSM003801.6E-353497IPR001471AP2/ERF domain
PRINTSPR003675.3E-83546IPR001471AP2/ERF domain
PRINTSPR003675.3E-85773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MARKRKGSEG LEEGNVAAWE DAAALGGGRR ARKRFVGVRQ RPSGRWVAEI KDTIQKIRVW  60
LGTFDTAEEA ARAYDEAACL LRGANTRTNF WPCSSSSSSA PALPSKITNL LLTRLKARNN  120
SLAGNGAPSS APACFQQVNQ VQEDEAAEFS ESHFTDYLND PDDCTADSSM IIPEISLESC  180
NLTETVNSSG ATEQGFNYES QNSAVQIHDE PEEEEEIEEE NTDDLRVVDF QFVDEIGSCY  240
FSPFQMAEEI SESMEHQQAM ISEGEELSMI SETMKRMNYE RKFSASLYAF NGITECLKLK  300
LKSGRERSDQ LSRLRNACKM SREKEEMKKD EEKEEIIVEK KEEETGDNAS SSSSSSSSTA  360
FDNESSIWSS IDLPPICFVT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019195159.10.0PREDICTED: uncharacterized protein LOC109188952
TrEMBLA0A2R6P9K61e-129A0A2R6P9K6_ACTCH; Ethylene-responsive transcription factor RAP2-11 like
STRINGXP_009621305.11e-125(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43102037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-21related to AP2 11