PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000626.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 663aa    MW: 74007.3 Da    PI: 4.365
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000626.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.1e-12516559146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              r rW++e+ el+++a++q+G++ ++ I + ++ gRt+ q+++++ k
  Itr_sc000626.1_g00003.1 516 RVRWSKEDTELFYEAIRQFGSD-FSMIQQLFP-GRTRTQVRLKYKK 559
                              78********************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159637.0E-27509592No hitNo description
Gene3DG3DSA:1.10.10.605.8E-8512559IPR009057Homeodomain-like
PROSITE profilePS512939.875514562IPR017884SANT domain
SMARTSM007177.0E-11515563IPR001005SANT/Myb domain
CDDcd001675.24E-9518559No hitNo description
SuperFamilySSF466891.87E-11518564IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MDSLDDLFSD GAAKTSRAVG KFQPKAKGRP VKKAATSSAP SSQSNQLGGA DKREGTEALK  60
AGQLSTKDGS CEHIVPAENA RAPVGSHMEG DTYMPENNRD LQCSLEKPVG ESADIYLGLE  120
SLDDLLPHDT NAMETTIPSS EQLATNVPKG DGEEQLAIPT TSPVGDPVPV SNIPGAQSSE  180
VSAAQGPLTR GEPVVATHEG VSQIDSIDLE IEGIETYPSL ETPDGPELAT ISGRHTGKFQ  240
PKPKPHVFKE SCDTGIPNSC AQDSQSTDFV DKERLPALSD DVLDLSSLGF DHALPSESTP  300
EVPVNEEMPN VDVNVPAEQP GSSGINEDEN IDTEVQVENE SQKKRGRKKS KKKAGDEEKP  360
ARKRKKANDK TEQATKEKPK KFPHTTRQKK RMVDKVLLDT PEEEIDFQRV PIKDLILLAE  420
HKERLAKKEA ALQTPQPQVN PRFFAFKLVY DNMILIVKFD LSNFDNSSEL NNEEERFTFD  480
EDENENGEAF EEQTTNQVED STVYFNYQTY MEKTPRVRWS KEDTELFYEA IRQFGSDFSM  540
IQQLFPGRTR TQVRLKYKKE EQRYPSRVHD ALTNRSKDHS RFEQVIAHLR KIAAEENPSD  600
DDIDEPIDLT GEEVEGQKEE PNSEHNEEAE VQDVEQDVAQ VNSSVVEEDE EDEDIWSQYK  660
SEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343351KRGRKKSKK
2346364RKKSKKKAGDEEKPARKRK
3350365KKKAGDEEKPARKRKK
4360366ARKRKKA
5361365RKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019181184.10.0PREDICTED: transcription factor TFIIIB component B'' isoform X1
RefseqXP_019181185.10.0PREDICTED: transcription factor TFIIIB component B'' isoform X1
RefseqXP_019181186.10.0PREDICTED: transcription factor TFIIIB component B'' isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59022326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.14e-42MYB_related family protein