PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000620.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 303aa    MW: 33554.8 Da    PI: 9.1497
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000620.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.6e-18108158256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+ge
  Itr_sc000620.1_g00004.1 108 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 158
                              59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.11E-16107167No hitNo description
SMARTSM003806.3E-35108171IPR001471AP2/ERF domain
PROSITE profilePS5103223.235108165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-30108166IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-22108166IPR016177DNA-binding domain
PRINTSPR003674.9E-10109120IPR001471AP2/ERF domain
PfamPF008471.2E-12109158IPR001471AP2/ERF domain
PRINTSPR003674.9E-10131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MESIHGSNMP FVYGKNTEIR SSLSQLILNG GANTMDSIFS CCPEQNQTAA NHHNSASEPL  60
GSSVYLLHRD ILQKFCQENR VTTPALFTRA PAFNDALSAY MNPMKKKLYR GVRQRHWGKW  120
VAEIRLPQNR MRVWLGTYET AEAAAYAYDR AAYKLRGEYA RLNFPNLRDP TKLGFGDATK  180
LAELKKAVDA KIHAISQKVK RESKSKESKS KRRNSVNSAN SAQTVRIESP SSSPFAGNQM  240
WGNDAVSTSV SGEEMCNCNS KTSTSSDSGG IPAVPSIDSE FDDCGLARIP SFDLELIWEV  300
LAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20107165160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-20105165263ATERF1
3gcc_A3e-20105165263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019168725.11e-156PREDICTED: ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W26e-66ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A067JN592e-93A0A067JN59_JATCU; Uncharacterized protein
STRINGXP_006439361.13e-89(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.13e-55ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]