PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000616.1_g00014.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 172aa MW: 19172.9 Da PI: 9.4315

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000616.1_g00014.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00082	45	67	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k F++ L H +H Itr_sc000616.1_g00014.1 45 FECKTCQKKFKSFQALGGHRASH 67 89**********99999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.31E-6	45	108	No hit	No description
Pfam	PF13912	3.6E-10	45	69	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.159	45	72	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.2	45	67	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	47	67	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.6E-9	85	110	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.19	86	108	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.411	86	113	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	88	108	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MTLKRSREEV AAEAEALAMA NCLVLLSRPA SGGAAGKTPP SGWEFECKTC QKKFKSFQAL 60 GGHRASHKRP KHLEHNNNNV NIKKRHECPV CGLEFGLGQA LGGHMRKHRA HQSHSDDKKS 120 PDLLTVTTLE NEEHSAGIKK KNEVLFDLNF TLLENDSIVH RRFVPTTLDL FV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019159845.1	1e-89	PREDICTED: zinc finger protein ZAT8-like
TrEMBL	A0A3S8T946	4e-38	A0A3S8T946_DIOKA; Transcription factor ZAT1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA366	24	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	3e-29	C2H2 family protein