PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000616.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 246aa    MW: 28543.9 Da    PI: 9.5351
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000616.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.8e-15855148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg+WT++Ed +lv +v+++G ++W+  a+  g++R++k+c++rw +yl
  Itr_sc000616.1_g00001.1  8 RGPWTEQEDVQLVLYVNMFGDRRWDFLAKVSGLKRSGKSCRLRWVNYL 55
                             89********************************************97 PP
2Myb_DNA-binding53.36.5e-1761106148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg+ T++E+ l+++++ ++G++ W++Ia++++ gRt++++k++w++++
  Itr_sc000616.1_g00001.1  61 RGKITPQEQRLILQLHSKWGNR-WSKIAQKLP-GRTDNEIKNYWRTHM 106
                              8999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.225355IPR017930Myb domain
SuperFamilySSF466891.35E-286102IPR009057Homeodomain-like
SMARTSM007176.8E-13757IPR001005SANT/Myb domain
PfamPF002495.0E-14855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-20962IPR009057Homeodomain-like
CDDcd001671.08E-81055No hitNo description
PROSITE profilePS5129426.14556110IPR017930Myb domain
SMARTSM007179.4E-1760108IPR001005SANT/Myb domain
PfamPF002499.0E-1661105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-2563109IPR009057Homeodomain-like
CDDcd001676.06E-1165106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MKMMMMRRGP WTEQEDVQLV LYVNMFGDRR WDFLAKVSGL KRSGKSCRLR WVNYLQPGLK  60
RGKITPQEQR LILQLHSKWG NRWSKIAQKL PGRTDNEIKN YWRTHMRKKA NEDRANKFGS  120
SSSPSPSSSS SLSNNSSSSS GGSSSPPAVN SRPIPDTNER NFYDTGGIIF EDETTPQQQQ  180
QQEKKIMDDH QQQKQVCSSS SMDDIWKDME LWAEQEKGGC TMWNYWSPAS TDRLCFFDNQ  240
DYAQYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-2851101105C-Myb DNA-Binding Domain
1msf_C2e-2851101105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019159859.12e-96PREDICTED: myb-like protein M
SwissprotQ9LX821e-64MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A1S4DKY05e-81A0A1S4DKY0_TOBAC; transcription factor MYB48-like
TrEMBLA0A1U7W0925e-81A0A1U7W092_NICSY; transcription factor MYB48-like
STRINGXP_009770621.19e-82(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.11e-64myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]