PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000588.1_g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | WOX | ||||||||
Protein Properties | Length: 212aa MW: 24167.6 Da PI: 10.1211 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.4 | 2.5e-18 | 9 | 70 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r +R+++t+eql +L+el+++ r+p+a + + ++++l ++++++V++WFqN++a++++ Itr_sc000588.1_g00012.1 9 RPRRWSPTPEQLMVLQELYRRgLRNPNAFQVRTITSHLalygKIETKNVFYWFQNHKARDRQ 70 568*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 103.4 | 1.5e-33 | 11 | 71 | 4 | 64 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 RW+PtpeQ+++L+ely++Glr+Pn+ +++ it++L+ yGkie kNVfyWFQN+kaR+rq+ Itr_sc000588.1_g00012.1 11 RRWSPTPEQLMVLQELYRRGLRNPNAFQVRTITSHLALYGKIETKNVFYWFQNHKARDRQR 71 6***********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.106 | 6 | 71 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-4 | 8 | 75 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.82E-10 | 8 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.85E-4 | 9 | 69 | No hit | No description |
Pfam | PF00046 | 6.4E-16 | 9 | 70 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-6 | 11 | 70 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MVGGEVTCRP RRWSPTPEQL MVLQELYRRG LRNPNAFQVR TITSHLALYG KIETKNVFYW 60 FQNHKARDRQ RLKKTLRQHL RYRPVFARQQ PQQPAGTQVQ NGCHQFLDGR SSSLDFCSAF 120 CHLSPRISTF LHQGGGGEEI LNMGVPTSCD NAGNSMTTTR MFDRDWMMLM ETGSSSVPRW 180 VDRTPITLQL FPLQATDIKG ESSTISSPVS SC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019199127.1 | 1e-127 | PREDICTED: WUSCHEL-related homeobox 3-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2959 | 19 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 5e-33 | WOX family protein |