PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000587.1_g00010.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 306aa MW: 34649.1 Da PI: 7.1126

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000587.1_g00010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178	2.5e-55	5	131	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhP+deel+++yL +kv++ ++++ ++i++vd++k+ePwdLp k++ +ek+wyfFs +d+ky+tg r+nrat++gyWk+t Itr_sc000587.1_g00010.1 5 LPPGFRFHPSDEELITYYLSNKVSDFTFTA-KAIADVDLNKCEPWDLPGKASMGEKQWYFFSLKDRKYPTGLRTNRATEAGYWKTT 89 79***********************999.88***********988999**************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 gkdke+++ +g lvg+kktLvfy+grapkg kt+Wvmheyrle Itr_sc000587.1_g00010.1 90 GKDKEIFC-GGVLVGMKKTLVFYRGRAPKGLKTNWVMHEYRLE 131 ****.******************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-63	4	151	IPR003441	NAC domain
PROSITE profile	PS51005	59.531	5	151	IPR003441	NAC domain
Pfam	PF02365	7.1E-28	6	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MEGNLPPGFR FHPSDEELIT YYLSNKVSDF TFTAKAIADV DLNKCEPWDL PGKASMGEKQ 60 WYFFSLKDRK YPTGLRTNRA TEAGYWKTTG KDKEIFCGGV LVGMKKTLVF YRGRAPKGLK 120 TNWVMHEYRL ENKHGFKPAK EEWIVCRVFE KSSTAKKPQA TSSSPQSPES PCDTTTFASE 180 LEDISDPPNL SWQNNYFNTP NPITTLPLLP WPPSLLTPTT NLSSVNSMLF RALQLRANQA 240 PIATTFGYSH TPQGTENHHL LTQFENDFIP SNNFAVTTAS SSMVLDSVNQ QEPPMEQPYR 300 LDSNIW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-56	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-56	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-56	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-56	4	157	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-56	4	157	19	174	NAC domain-containing protein 19
3swm_B	1e-56	4	157	19	174	NAC domain-containing protein 19
3swm_C	1e-56	4	157	19	174	NAC domain-containing protein 19
3swm_D	1e-56	4	157	19	174	NAC domain-containing protein 19
3swp_A	1e-56	4	157	19	174	NAC domain-containing protein 19
3swp_B	1e-56	4	157	19	174	NAC domain-containing protein 19
3swp_C	1e-56	4	157	19	174	NAC domain-containing protein 19
3swp_D	1e-56	4	157	19	174	NAC domain-containing protein 19
4dul_A	2e-56	4	157	16	171	NAC domain-containing protein 19
4dul_B	2e-56	4	157	16	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019176842.1	1e-179	PREDICTED: NAC domain-containing protein 92-like
Swissprot	Q9FLJ2	1e-80	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2Z5HVJ2	0.0	A0A2Z5HVJ2_IPOBA; NAC4 protein
STRING	XP_009779881.1	1e-121	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-101	NAC domain containing protein 58

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]