PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000567.1_g00033.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HB-other

Protein Properties

Length: 1784aa MW: 199818 Da PI: 5.266

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000567.1_g00033.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.5	1.1e-18	45	99	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ ++k+ yps++ r+eL+ klgLt+rq ++WF+ rR k++k Itr_sc000567.1_g00033.1 45 KRKMKTASQLEILEKTYAKEAYPSEAVRAELSVKLGLTDRQLQMWFCHRRLKDRK 99 89999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.4E-18	27	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.84E-16	35	99	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.455	40	100	IPR001356	Homeobox domain
SMART	SM00389	1.5E-16	42	104	IPR001356	Homeobox domain
CDD	cd00086	5.31E-14	43	99	No hit	No description
Pfam	PF00046	3.3E-16	45	99	IPR001356	Homeobox domain
SMART	SM00571	2.0E-22	633	692	IPR018501	DDT domain
PROSITE profile	PS50827	17.013	633	692	IPR018501	DDT domain
Pfam	PF02791	1.3E-17	635	689	IPR018501	DDT domain
Pfam	PF05066	3.3E-14	763	830	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.2E-9	972	1011	IPR028942	WHIM1 domain
Pfam	PF15613	7.3E-12	1151	1222	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1784 aa Download sequence Send to blast
MEPPGGGNGG ESAAPAGVAG GSAGGSGGSD VEKKKPPEGG EPKVKRKMKT ASQLEILEKT 60 YAKEAYPSEA VRAELSVKLG LTDRQLQMWF CHRRLKDRKA PSAPSVKRTR KEDLPGAMVS 120 SCGQDDIATG GELRSGHASA SASGLNPHTP VDLQQHHPRV VHRPGTAVPR YAAEMPAMKR 180 YYEPPQAISE LRAIAFVEAQ LGEPLREDGP ILGMEFDPLP PGAFGAPIVT AVHHKPAERS 240 FDTELYERQD SRQIKVILLI SFQDILSSYA AKFEIAIMVF SGFSFCLYDG PTRTLLEYQF 300 IPEQPSIRSD AYERTVPHHY YGSPSEAQGT RPSLSSGRSY LHNSEHFPSG YSIQTQPPTL 360 SLLHQQGRHA HLSPASEEVD VAPQGSSHVK ISVEGNFGSH PITGLENQFV SPETRVIHEE 420 ERLERKRKVS IVSATSFSFL FRGSGGWWSE EAKMAREVEA HEKRIRKELE KQDMLRRKRE 480 EQMRKEMERQ DRERRKEEER LLREKQREEE RYLREQRREM ERREKFLQKE SKRVEKMKLK 540 EEMRREKEAA KLKAANERAA ARRIAKESIE LIEDERLELM ELAASRKGLP SVLALDNEAL 600 QNLESFADML REFPPKFVCL KKPFGIQPWI GSDANVGNLL MVWRFLITFS DVLSLWPFTL 660 DELVQAFHDY DPRLLGEIHI ALLRSIIKDI EDVARTSSAV VGVNQNNAAN PGGGHPQIVE 720 GGNDAADIIS NLRNGVAAEN ALSKMQERGL SNPRRSRHRL TPGTVKFAAF HVLSFEGSKG 780 LTILDVAERI QASGLRDLTT SKTPEASIAA ALSRDTKLFE RTAPSTYCVR TPYRKDPADA 840 EALLAAAREK VHLFKNRCLN GEEADDGEKD DVEREEDSES DAAEDPEVDN LEDETNINKS 900 SGSCKPSRLE DHKISYDLTE MPPGSVQNSP TLMQASGLLG EKTSGDQLVD TGSQCESSIP 960 DQENTIVDDG SAGEQWVQGL MDGEYSDLSV EERLDALVAL VGFANEGNSI RIALEERLEA 1020 ASALKKQMWA EAQLDKRRFK DDYVIKMQYS SVINKAEQNF SISAMESRQC LSLAINANNG 1080 AAPLNSAAQP GDSNNPNYSS NVIVERNLPL QEFSAGPDNI QVQHLGYVAE KSRMQLKTYI 1140 GYRAEQTYVY RSLPLGQDRR RNRYWQFITS SRNDPGYGRI FVELRDGQWR LIDSEKGFDA 1200 LLASLDVRGI RESHLHLMLQ RIEVTFKETA RRNTLQMSSV PDVENDVKNE ALEKTSTLDK 1260 DPNSAPCISN CDLSEPSASF AIGVGRNIVE KSDALRRYLD FEKWMWEECL DSKFLCAMKE 1320 GKIRRRNLLR VCDDCHVLYF EENHCPFCHT TYAKNSKFSE HLTRCKEKLK DEYLSPYRAL 1380 YSSPPIRLRL LKAQLASLEA RISSLSPFFL KLLNLFGQRS IEAIGLLTML ECAIKRDFLL 1440 SNYETSNELL GIADQPAGFE RVGVLPWIPH TTAALALRLM ELDTSIYYTQ QQKEESQKGA 1500 RNFSALPSKY TIPRNVAEEV PAEALHEAGM WPNVENGSGS GRGRGRGRGR RRISIEKSQR 1560 KIVDSKPESA AHRKSIASND RLGGLPGWKG QSKGQGGRRK GRRSARSRQR AVKNVNITIN 1620 AENRPSSVEQ QWKEDETAQI QIAAAENDSS PERSGFENDN GQASEDEYDD YVMTEDYPGL 1680 FSAKSGQQME MGGNYDADQG IDDGIDDMDY ANDDYIDGDD EVEGEEDAPG NEEDIEGYFN 1740 GDSEDEGNRF RAGDSEDEGN RFRAEEQIES ESQDSPSSSS DYSE

Sequence ? help Back to Top

Protein Sequence Length: 1784 aa Download sequence Send to blast

MEPPGGGNGG ESAAPAGVAG GSAGGSGGSD VEKKKPPEGG EPKVKRKMKT ASQLEILEKT  60
YAKEAYPSEA VRAELSVKLG LTDRQLQMWF CHRRLKDRKA PSAPSVKRTR KEDLPGAMVS  120
SCGQDDIATG GELRSGHASA SASGLNPHTP VDLQQHHPRV VHRPGTAVPR YAAEMPAMKR  180
YYEPPQAISE LRAIAFVEAQ LGEPLREDGP ILGMEFDPLP PGAFGAPIVT AVHHKPAERS  240
FDTELYERQD SRQIKVILLI SFQDILSSYA AKFEIAIMVF SGFSFCLYDG PTRTLLEYQF  300
IPEQPSIRSD AYERTVPHHY YGSPSEAQGT RPSLSSGRSY LHNSEHFPSG YSIQTQPPTL  360
SLLHQQGRHA HLSPASEEVD VAPQGSSHVK ISVEGNFGSH PITGLENQFV SPETRVIHEE  420
ERLERKRKVS IVSATSFSFL FRGSGGWWSE EAKMAREVEA HEKRIRKELE KQDMLRRKRE  480
EQMRKEMERQ DRERRKEEER LLREKQREEE RYLREQRREM ERREKFLQKE SKRVEKMKLK  540
EEMRREKEAA KLKAANERAA ARRIAKESIE LIEDERLELM ELAASRKGLP SVLALDNEAL  600
QNLESFADML REFPPKFVCL KKPFGIQPWI GSDANVGNLL MVWRFLITFS DVLSLWPFTL  660
DELVQAFHDY DPRLLGEIHI ALLRSIIKDI EDVARTSSAV VGVNQNNAAN PGGGHPQIVE  720
GGNDAADIIS NLRNGVAAEN ALSKMQERGL SNPRRSRHRL TPGTVKFAAF HVLSFEGSKG  780
LTILDVAERI QASGLRDLTT SKTPEASIAA ALSRDTKLFE RTAPSTYCVR TPYRKDPADA  840
EALLAAAREK VHLFKNRCLN GEEADDGEKD DVEREEDSES DAAEDPEVDN LEDETNINKS  900
SGSCKPSRLE DHKISYDLTE MPPGSVQNSP TLMQASGLLG EKTSGDQLVD TGSQCESSIP  960
DQENTIVDDG SAGEQWVQGL MDGEYSDLSV EERLDALVAL VGFANEGNSI RIALEERLEA  1020
ASALKKQMWA EAQLDKRRFK DDYVIKMQYS SVINKAEQNF SISAMESRQC LSLAINANNG  1080
AAPLNSAAQP GDSNNPNYSS NVIVERNLPL QEFSAGPDNI QVQHLGYVAE KSRMQLKTYI  1140
GYRAEQTYVY RSLPLGQDRR RNRYWQFITS SRNDPGYGRI FVELRDGQWR LIDSEKGFDA  1200
LLASLDVRGI RESHLHLMLQ RIEVTFKETA RRNTLQMSSV PDVENDVKNE ALEKTSTLDK  1260
DPNSAPCISN CDLSEPSASF AIGVGRNIVE KSDALRRYLD FEKWMWEECL DSKFLCAMKE  1320
GKIRRRNLLR VCDDCHVLYF EENHCPFCHT TYAKNSKFSE HLTRCKEKLK DEYLSPYRAL  1380
YSSPPIRLRL LKAQLASLEA RISSLSPFFL KLLNLFGQRS IEAIGLLTML ECAIKRDFLL  1440
SNYETSNELL GIADQPAGFE RVGVLPWIPH TTAALALRLM ELDTSIYYTQ QQKEESQKGA  1500
RNFSALPSKY TIPRNVAEEV PAEALHEAGM WPNVENGSGS GRGRGRGRGR RRISIEKSQR  1560
KIVDSKPESA AHRKSIASND RLGGLPGWKG QSKGQGGRRK GRRSARSRQR AVKNVNITIN  1620
AENRPSSVEQ QWKEDETAQI QIAAAENDSS PERSGFENDN GQASEDEYDD YVMTEDYPGL  1680
FSAKSGQQME MGGNYDADQG IDDGIDDMDY ANDDYIDGDD EVEGEEDAPG NEEDIEGYFN  1740
GDSEDEGNRF RAGDSEDEGN RFRAEEQIES ESQDSPSSSS DYSE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	46	KKPPEGGEPKVKRK
2	1541	1551	RGRGRGRGRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019194149.1	0.0	PREDICTED: homeobox-DDT domain protein RLT2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A1U7W199	0.0	A0A1U7W199_NICSY; uncharacterized protein LOC104223969
STRING	XP_009773812.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator