PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000561.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRAS | ||||||||
Protein Properties | Length: 115aa MW: 13087.3 Da PI: 10.3031 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 85.2 | 1.1e-26 | 2 | 96 | 18 | 122 |
GRAS 18 elaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103 +la+al++++ l+ +++ +m+++a yf+eAL +r++r l ps+ + + + + + f+e +P+lkf+h+taNqaIl Itr_sc000561.1_g00004.1 2 KLAEALVKQIGFLVVSQAGAMRKVAIYFAEALIQRIYR--------LYPSNHN--DFAFSGLLQMHFYESCPYLKFAHFTANQAIL 77 689***********************************........4444444..56667667777******************** PP GRAS 104 eavegeervHiiDfdisqG 122 ea+++++rvH iDf+++ G Itr_sc000561.1_g00004.1 78 EAFANKNRVHAIDFSMKLG 96 ***************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 19.534 | 1 | 115 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.9E-24 | 2 | 96 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MKLAEALVKQ IGFLVVSQAG AMRKVAIYFA EALIQRIYRL YPSNHNDFAF SGLLQMHFYE 60 SCPYLKFAHF TANQAILEAF ANKNRVHAID FSMKLGCNGR LSSRLKLATE RNLKV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019160270.1 | 2e-54 | PREDICTED: DELLA protein GAI1-like | ||||
Swissprot | Q8S4W7 | 3e-47 | GAI1_VITVI; DELLA protein GAI1 | ||||
TrEMBL | A0A1S3YKV3 | 2e-49 | A0A1S3YKV3_TOBAC; DELLA protein GAI1-like | ||||
TrEMBL | A0A1U7XHE4 | 2e-49 | A0A1U7XHE4_NICSY; DELLA protein GAI1-like | ||||
STRING | XP_009789076.1 | 3e-50 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 4e-44 | GRAS family protein |