PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000560.1_g00013.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Nin-like

Protein Properties

Length: 1558aa MW: 174491 Da PI: 9.2796

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000560.1_g00013.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	27.6	5.6e-09	82	108	23	49
RWP-RK 23 keLgvclTvLKriCRqyGIkRWPhRki 49 + +v+ + K++CR+ GI WP+Rk+ Itr_sc000560.1_g00013.1 82 INANVGRATFKKKCREVGIVYWPYRKL 108 3668**********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	9.932	42	132	IPR003035	RWP-RK domain
Pfam	PF14223	9.1E-14	302	432	No hit	No description
Pfam	PF13976	9.1E-9	657	705	IPR025724	GAG-pre-integrase domain
PROSITE profile	PS50994	18.181	710	902	IPR001584	Integrase, catalytic core
SuperFamily	SSF53098	1.74E-30	720	896	IPR012337	Ribonuclease H-like domain
Pfam	PF00665	4.7E-11	720	852	IPR001584	Integrase, catalytic core
Gene3D	G3DSA:3.30.420.10	8.3E-21	720	895	IPR012337	Ribonuclease H-like domain
SuperFamily	SSF56672	1.22E-36	1074	1297	No hit	No description
Pfam	PF07727	9.9E-91	1075	1317	IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamily	SSF56672	1.22E-36	1323	1508	No hit	No description
CDD	cd09272	8.83E-73	1401	1540	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0015074	Biological Process	DNA integration
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 1558 aa Download sequence Send to blast
MANTTHSSSQ DNSSFWDEIH LSPLRDSAPS TDHSSVENFE NAPPELNEIV DTAVTDVVAA 60 DQSNTVVVEE DYTITAVDVA NINANVGRAT FKKKCREVGI VYWPYRKLEF GEIKDQAELQ 120 RVIKGLEDEK KAILQNPNIE LAEATTRLRD KCDRNSSKKR RYIDPTTIPS TIPESSSQAP 180 IFPDIPELAP EDIQEVRNPS RTPSSFRVTM TTNSADGALV PSRQPPSPAT PFLATAHQAL 240 SIKLFTHNYI YWRTQVLPFL RSQGLIGYVD GSIPCPPATI STVATQPSAP PITSPNPAYL 300 PWIQQDQAIL SLLVSSLTSE VMYLAVGKDN SKEVWDSINA ALASTSRSRC LSLLGQFQTL 360 RQANLTPGEY LGQAQMLVES LSLAGRPLTA NEQLLYVLRG LRPEFRAMAS SLTTPGTPVK 420 LAQLADHLRA QEFIQSDEFA ALETVPANNP QTAFFAGRGR NTGGGRSNNR GGRNGRGRGN 480 SRGRNGGAPR CQICQLTGHS AVSCYKRYDD RPTAHANVAF SGDPNGHTSA DAWYPNTGAS 540 AHATPDAQMM DHSEPYSGND VLKIGNGTGL GVSSVGRTVI RFDSHNFHMS NILHVPKLSI 600 PLLSVYRFTN ENNVFFEFHK NLFYVKDCTT RAILLKGSTI GGLYQLILPR GHNAFLSARA 660 SSVVWHQRLG YPHSQLLQRV LQTCPVTTNN INSIKMCSAC QLGKSSRFPL DRVPGSSHNV 720 LDLVYTDIWG PSPVISNTGS RYFVLFVDDC TRFTWFYPLR VKSDIYKTFN SFRAMVERQF 780 SXXXXXXXXX XXXXXXXVER QFSRSIKAIQ SDLGGEYRHL HTLFQSLGIL HRQSCAYTHE 840 QNGRVERKNR HIVETGLALL AESKTPLKYW EYAFETATYL INCLPSTALN FLSPYSKLFN 900 TQPPYTFFRV FGCRCYPYLW PYNRHKIEYR STPCIFLGYP VGYRGYRCLD LHTGKIYTCR 960 HVRFSENVFP FALQERMQDN TVPGSPDTTW AIAPVLTTSQ PPVISVPVKS ASPTVSILVP 1020 TESSGTQVDT QALTSSTDTR TTTDRAQDGG HVMRTRRKTR GTDAMDQEFN ALLHNHTWKL 1080 VPATPRMNII GCKWVFRTKR KADGTVERYK ARLVAKGFNQ VAREDFFDTF SPVVKPTTVR 1140 LLFSLAVSNS WTLRQLDVHN AFLNGHLPET VYMKQPPGYE DPLHPDHVCH LQRSLYGLKQ 1200 APRAWFKRLH DFLTTVGFSP SKTDVSLFHY TAGESRVFLL VYVDDIIMLG NDPKLIDSLL 1260 RQMSSVFTIR DLRAPGFFLG IETIPCKEGL LLSQKRYMKD ILLRAGMADC KPLATPAPVS 1320 QSQASSSELF DNPTQYRRII GALQYLTITR PDLSYSVNRL CQFMHSPTTE HWGLLKRVCR 1380 YIKGTQDLGL RLTKSKHFAL HAYSDSDWAG CPVDRKSTSG YAVYLGDNLI SWVSRKQRTV 1440 ARSSTEAEYK GLADVAAEVT WVVSLLRQLR LHSGQPTTLW CDNLGATYLA ANPVFHARTK 1500 HVEVDYHFIR DKVASGDLVV NFVSTKDQLT DIFTKPLPAQ RFQALRSKLN VTTYQSCA

Sequence ? help Back to Top

Protein Sequence Length: 1558 aa Download sequence Send to blast

MANTTHSSSQ DNSSFWDEIH LSPLRDSAPS TDHSSVENFE NAPPELNEIV DTAVTDVVAA  60
DQSNTVVVEE DYTITAVDVA NINANVGRAT FKKKCREVGI VYWPYRKLEF GEIKDQAELQ  120
RVIKGLEDEK KAILQNPNIE LAEATTRLRD KCDRNSSKKR RYIDPTTIPS TIPESSSQAP  180
IFPDIPELAP EDIQEVRNPS RTPSSFRVTM TTNSADGALV PSRQPPSPAT PFLATAHQAL  240
SIKLFTHNYI YWRTQVLPFL RSQGLIGYVD GSIPCPPATI STVATQPSAP PITSPNPAYL  300
PWIQQDQAIL SLLVSSLTSE VMYLAVGKDN SKEVWDSINA ALASTSRSRC LSLLGQFQTL  360
RQANLTPGEY LGQAQMLVES LSLAGRPLTA NEQLLYVLRG LRPEFRAMAS SLTTPGTPVK  420
LAQLADHLRA QEFIQSDEFA ALETVPANNP QTAFFAGRGR NTGGGRSNNR GGRNGRGRGN  480
SRGRNGGAPR CQICQLTGHS AVSCYKRYDD RPTAHANVAF SGDPNGHTSA DAWYPNTGAS  540
AHATPDAQMM DHSEPYSGND VLKIGNGTGL GVSSVGRTVI RFDSHNFHMS NILHVPKLSI  600
PLLSVYRFTN ENNVFFEFHK NLFYVKDCTT RAILLKGSTI GGLYQLILPR GHNAFLSARA  660
SSVVWHQRLG YPHSQLLQRV LQTCPVTTNN INSIKMCSAC QLGKSSRFPL DRVPGSSHNV  720
LDLVYTDIWG PSPVISNTGS RYFVLFVDDC TRFTWFYPLR VKSDIYKTFN SFRAMVERQF  780
SXXXXXXXXX XXXXXXXVER QFSRSIKAIQ SDLGGEYRHL HTLFQSLGIL HRQSCAYTHE  840
QNGRVERKNR HIVETGLALL AESKTPLKYW EYAFETATYL INCLPSTALN FLSPYSKLFN  900
TQPPYTFFRV FGCRCYPYLW PYNRHKIEYR STPCIFLGYP VGYRGYRCLD LHTGKIYTCR  960
HVRFSENVFP FALQERMQDN TVPGSPDTTW AIAPVLTTSQ PPVISVPVKS ASPTVSILVP  1020
TESSGTQVDT QALTSSTDTR TTTDRAQDGG HVMRTRRKTR GTDAMDQEFN ALLHNHTWKL  1080
VPATPRMNII GCKWVFRTKR KADGTVERYK ARLVAKGFNQ VAREDFFDTF SPVVKPTTVR  1140
LLFSLAVSNS WTLRQLDVHN AFLNGHLPET VYMKQPPGYE DPLHPDHVCH LQRSLYGLKQ  1200
APRAWFKRLH DFLTTVGFSP SKTDVSLFHY TAGESRVFLL VYVDDIIMLG NDPKLIDSLL  1260
RQMSSVFTIR DLRAPGFFLG IETIPCKEGL LLSQKRYMKD ILLRAGMADC KPLATPAPVS  1320
QSQASSSELF DNPTQYRRII GALQYLTITR PDLSYSVNRL CQFMHSPTTE HWGLLKRVCR  1380
YIKGTQDLGL RLTKSKHFAL HAYSDSDWAG CPVDRKSTSG YAVYLGDNLI SWVSRKQRTV  1440
ARSSTEAEYK GLADVAAEVT WVVSLLRQLR LHSGQPTTLW CDNLGATYLA ANPVFHARTK  1500
HVEVDYHFIR DKVASGDLVV NFVSTKDQLT DIFTKPLPAQ RFQALRSKLN VTTYQSCA

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2	3	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	7e-11	RWP-RK domain-containing protein