PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000560.1_g00012.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 647aa MW: 74017.2 Da PI: 7.6694

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000560.1_g00012.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.2	2.3e-07	46	99	38	90
FAR1 38 egkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 e k+++ ++ ++ +r+r+++r+gC ak++ +++ +++ev ++e+ H+H+l+ Itr_sc000560.1_g00012.1 46 EAKDTDLMESgaPTHPKRRRTSNRVGCIAKINFRLN-GEVYEVVSFEERHTHDLC 99 44443333335567789999**************.***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-5	43	99	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.5E-28	221	311	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 647 aa Download sequence Send to blast
MGPSDHTVEM QTTDMEESAD VPKYWMTTCD PSLKPVVGQR FERYKEAKDT DLMESGAPTH 60 PKRRRTSNRV GCIAKINFRL NGEVYEVVSF EERHTHDLCE DNYKPFMKVN RKLDIGHQHF 120 IANCAKANIG PSKTFNLYAE MVGGTNKVGT TQQDFINYKR EILAYMKGGD AQMVLSNYLE 180 KKSDCDDFYF EYEVNEKDQL SRVFWADGVA RKQFSVFGEA MAFDVTYQTN KYKLVFVPFT 240 GVDHHKRCVT FATGLIARED EDSYRWLLIN FKKAMGRTPP ITITDQDPAM KVAIAMEFPE 300 TGHRFCMWHI LTKVGDKVGG EMAKNTEFRR ALNSVVWNEN CMPEEFENGW NGVVHKYGLQ 360 DNGWLKLMYE QRESWIPAYF QDMFMGGLLR TTSRSESENS VFRSNTSKHM CLVKFFYQFE 420 RTINRQRSKQ AELDAACNGH LPALKTPLSV EREAASIYTL AIFYQLQGEI IDDKGKSYTV 480 IVENGSNNIS FTCRMYRRIG LLCSHAFVIL KDERFDHIPP QHITPRWTRD VVQKTSRDPY 540 SCTQAEELQS AAKSMEETQV INTFYKCLGL ANGRVEKLQQ IAHALEGVET SISGDKDSGE 600 ANLGKRATME TYCGILAPET IVVHPPQVSK NKGSGKRIKS MKEIAIK

Sequence ? help Back to Top

Protein Sequence Length: 647 aa Download sequence Send to blast

MGPSDHTVEM QTTDMEESAD VPKYWMTTCD PSLKPVVGQR FERYKEAKDT DLMESGAPTH  60
PKRRRTSNRV GCIAKINFRL NGEVYEVVSF EERHTHDLCE DNYKPFMKVN RKLDIGHQHF  120
IANCAKANIG PSKTFNLYAE MVGGTNKVGT TQQDFINYKR EILAYMKGGD AQMVLSNYLE  180
KKSDCDDFYF EYEVNEKDQL SRVFWADGVA RKQFSVFGEA MAFDVTYQTN KYKLVFVPFT  240
GVDHHKRCVT FATGLIARED EDSYRWLLIN FKKAMGRTPP ITITDQDPAM KVAIAMEFPE  300
TGHRFCMWHI LTKVGDKVGG EMAKNTEFRR ALNSVVWNEN CMPEEFENGW NGVVHKYGLQ  360
DNGWLKLMYE QRESWIPAYF QDMFMGGLLR TTSRSESENS VFRSNTSKHM CLVKFFYQFE  420
RTINRQRSKQ AELDAACNGH LPALKTPLSV EREAASIYTL AIFYQLQGEI IDDKGKSYTV  480
IVENGSNNIS FTCRMYRRIG LLCSHAFVIL KDERFDHIPP QHITPRWTRD VVQKTSRDPY  540
SCTQAEELQS AAKSMEETQV INTFYKCLGL ANGRVEKLQQ IAHALEGVET SISGDKDSGE  600
ANLGKRATME TYCGILAPET IVVHPPQVSK NKGSGKRIKS MKEIAIK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	60	66	PKRRRTS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019158424.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3136	2	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-80	FAR1-related sequence 5