PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000559.1_g00013.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 428aa    MW: 47321.4 Da    PI: 9.0261
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000559.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-0581103123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++C+k F r  nL+ H r H
  Itr_sc000559.1_g00013.1  81 FVCEICNKGFQRDQNLQLHRRGH 103
                              89*******************88 PP
2zf-C2H212.70.00038158180123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC +C+k +  +s+ k H +++
  Itr_sc000559.1_g00013.1 158 WKCDKCSKKYAVQSDWKAHAKVC 180
                              58*****************9987 PP
3zf-C2H211.20.0012188206523
                              TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                              dCg+ Fsr++++++H   +
  Itr_sc000559.1_g00013.1 188 DCGTIFSRRDSFVTHRAFC 206
                              9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.37E-780103No hitNo description
Gene3DG3DSA:3.30.160.601.4E-580103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.94981103IPR007087Zinc finger, C2H2
SMARTSM003550.01781103IPR015880Zinc finger, C2H2-like
PfamPF121716.6E-581103IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM0035598123153IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.3E-5146178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.37E-7153178No hitNo description
SMARTSM00355150158178IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MSCTALPPTF HPSLLGLILH PTLHPPLLGS LFACLSAYLL PQCHCLLIIN QERLPPKGNW  60
GNPSAEVIAL SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRMSSEMTKK  120
RVYVCPEASC IHHNPARALG DLTGIKKHYS RKHGEKKWKC DKCSKKYAVQ SDWKAHAKVC  180
GTKEYTCDCG TIFSRRDSFV THRAFCDALA EENTKVLNTH GLQASELNPS SPTTLPETIQ  240
SDMKTPPRDF LPAPPPKPLN MAPSMFSGCS PTTLFSTPKI LPASSSSLLH FNAIPPNMSA  300
TALLQKAAQI GATTSTNIVC SPMLQRGFGS SMDPSLINHG VQVQTDKSQL AGVISGFYYH  360
QNQNLSSGLD LQKLTGNNKE MRRDENLTVD FLGVGGRNFH ELQHQEMGLE NQAVSQQRMQ  420
GLSAVWDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33154216365Zinc finger protein JACKDAW
5b3h_F1e-33154216365Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019186111.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-106IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A1S4DRB61e-125A0A1S4DRB6_TOBAC; protein indeterminate-domain 2-like
STRINGXP_009628988.11e-126(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.12e-90indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]