PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000556.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 467aa    MW: 50798.5 Da    PI: 7.3341
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000556.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.53.8e-10233281553
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                              kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+
  Itr_sc000556.1_g00001.1 233 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQ 281
                              9****************************************99876554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.8E-11229295IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.887231281IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.0E-10233281No hitNo description
PfamPF001705.9E-9233280IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.76E-10233281No hitNo description
CDDcd147033.85E-23234281No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MDKDKSSGHG GGLLPPSGRS SVFSPPCSNI NVKSEPSGSF SLPPLGPSAG ASESGHFGIG  60
RPSDSSQFSY DISCMPDNPR KHMGHRRAHS EILTLPDDIS FDSDLGVVGG FDGPSLSDET  120
EEDLFSMFLD MDKINASSAT SAFQAGESSS SGAMASGSSQ TPASGSLMPT FENVSPAVSE  180
RPRVRHQHSQ SMDGSTTIKA EMLTSGSEEQ SPAELKKAMS AAKLAELALI DPKRAKRIWA  240
NRQSAARSKE RKMRYIAELE RKVQTLQTEA TSLSAQLTLL QLTGSIAQTK KANRSLPRSR  300
TYNLVVIKLT ATNLAERDTN GLTAENSELK VRLTTMEQQV HLQDALNDAL REEIQHLKVL  360
TGQGMANGGA MMNFPPSSAG ANQNQQFYRN NQAMHTLLTT QQFQQLQIKS QKQLHSYQQQ  420
QHQLHQLQQL QHHQPQEQHL HQSGDMKLRN PLSVSAQNEN PSDGSSA
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165785.10.0PREDICTED: probable transcription factor PosF21
RefseqXP_019165786.10.0PREDICTED: probable transcription factor PosF21
SwissprotQ040881e-131POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A328DRJ10.0A0A328DRJ1_9ASTE; Uncharacterized protein
TrEMBLA0A484L8210.0A0A484L821_9ASTE; Uncharacterized protein
STRINGXP_008222595.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39652137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-117bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]