PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000553.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 153aa MW: 16945.5 Da PI: 10.0835 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.6 | 8.5e-15 | 30 | 77 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG++ +k +grWv eIr ++r +lg++ t+ Aa+a++ a +l+g Itr_sc000553.1_g00003.1 30 PYKGICLRK-WGRWVTEIRFA-----NTRLWLGSYHTPVAAARAYDVALFYLRG 77 59*****99.**********3.....5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 18.769 | 30 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-17 | 30 | 85 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.9E-24 | 30 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-9 | 31 | 42 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.3E-9 | 31 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.52E-20 | 31 | 86 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.8E-23 | 31 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-9 | 67 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MAAGAGDGVG ATAKVGGMEK KKRQPRQKNP YKGICLRKWG RWVTEIRFAN TRLWLGSYHT 60 PVAAARAYDV ALFYLRGPGA KLNFPEFAVG DGQHRELTPK EIQNRAMAVG CRIDAIQRGL 120 HISPAQMSVN VTDHHPEPDV YVTPDLNKCP HLD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019152321.1 | 7e-41 | PREDICTED: ethylene-responsive transcription factor RAP2-1-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA943 | 23 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46768.1 | 1e-32 | related to AP2 1 |