PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000553.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 431aa MW: 49819.4 Da PI: 6.3088

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000553.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	154	177	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++++Lk+H + H Itr_sc000553.1_g00002.1 154 YICSVCGRKCKTNMDLKKHFKQlH 177 89*****************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.0079	154	177	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.198	154	182	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	156	177	IPR007087	Zinc finger, C2H2
CDD	cd06167	4.09E-10	168	308	No hit	No description
Gene3D	G3DSA:3.40.50.1010	7.7E-5	239	295	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MLSATLFNPI QLKTHSSILP KQLSPNFSSF KPILLLPPKP SIYPQRALRW SIKACASGQE 60 IDMVRTKEGV YTAKSKKVVV LWDLDNKPPR GPPYKAAMEL KKLAEKFGDV VDMSAYANRH 120 AFIHLPQWVI DERRERRRLD ILERKGAVTP SEPYICSVCG RKCKTNMDLK KHFKQLHERE 180 REKKMNRMRA LKGKKRQRFK ERFIDNNQKY MEAARSLVTP KEGYGLASEL RRAGVFVKTV 240 ADKPQAADWA LKRQMQHSMS RGIDWLFLVS DDSDFSEMLK RARIANLGTV VVGDWDRSLG 300 RYADLWVPWI GVENGEITEN DLVLKKQRSS NSRFSVSEFD GGMTEEIANF DGFMDDLVER 360 REFIGSRGSA FSEAEDSDFE EENDEVYWLR LDGKNGKRFQ NGVSINSEDE DEEEEEDYIF 420 DSEDEETDMD D

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MLSATLFNPI QLKTHSSILP KQLSPNFSSF KPILLLPPKP SIYPQRALRW SIKACASGQE  60
IDMVRTKEGV YTAKSKKVVV LWDLDNKPPR GPPYKAAMEL KKLAEKFGDV VDMSAYANRH  120
AFIHLPQWVI DERRERRRLD ILERKGAVTP SEPYICSVCG RKCKTNMDLK KHFKQLHERE  180
REKKMNRMRA LKGKKRQRFK ERFIDNNQKY MEAARSLVTP KEGYGLASEL RRAGVFVKTV  240
ADKPQAADWA LKRQMQHSMS RGIDWLFLVS DDSDFSEMLK RARIANLGTV VVGDWDRSLG  300
RYADLWVPWI GVENGEITEN DLVLKKQRSS NSRFSVSEFD GGMTEEIANF DGFMDDLVER  360
REFIGSRGSA FSEAEDSDFE EENDEVYWLR LDGKNGKRFQ NGVSINSEDE DEEEEEDYIF  420
DSEDEETDMD D

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004232567.1	0.0	uncharacterized protein LOC101257921
TrEMBL	A0A1U8FVB1	0.0	A0A1U8FVB1_CAPAN; uncharacterized protein LOC107859780
STRING	XP_009623477.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12268	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-131	C2H2-like zinc finger protein