PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000549.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 737aa    MW: 82576.9 Da    PI: 5.1618
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000549.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.93.1e-1093627341373
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lL++cA+ v+++d + a++ L+++++++sp+gd++qRla +f+++L+arla+++++ly+al+p++ +     e+l+a++++  
  Itr_sc000549.1_g00009.1 362 LRTLLISCAQSVAADDRRTANEQLKQIRQHSSPNGDANQRLANVFANGLEARLAGTGTQLYAALAPKRIT---AFEKLKAYQVYMS 444
                              6789***************************************************************999...9************ PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                              ++P+ k++   aN++I +   g+ ++H+iDf+i +G+QWp L+q L+sRp+gpp+lR+Tg++ p++g   +e++eetg+rL k++e
  Itr_sc000549.1_g00009.1 445 ACPFKKIAMTFANKMIHKISMGAPTLHVIDFGILYGFQWPILIQHLSSRPGGPPKLRVTGIDLPQPGfrPAEMIEETGRRLGKYCE 530
                              ******************************************************************9*9***************** PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              ++gvpfe+n+++++++e++++e+L++ +gE++aVn+ ++ ++llde+v+++s+rd+vL+l+++++P ++v++  + +++++ F++r
  Itr_sc000549.1_g00009.1 531 RFGVPFEYNAIATQNWETIKIEDLKLVSGEVVAVNCLYRFKNLLDETVAVDSPRDAVLSLIRKINPSIFVHAVINGSYSAPFFVTR 616
                              ***********999************************************************************************ PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f eal ++salfd+++a++pr++++r   E+e+ gre  nv+aceg er+er et+++W+ r ++aGFk +pl+ + +++ +   +
  Itr_sc000549.1_g00009.1 617 FREALFHFSALFDMFDATIPRDDQHRFHFEQEFYGRETLNVIACEGVERVERAETYKQWQVRTMRAGFKLLPLNPELMTKLREKKA 702
                              *******************************************************************************9988766 PP

                     GRAS 343 kvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                                +  + +  +e+ +++++gWk+r + +  +W
  Itr_sc000549.1_g00009.1 703 AGGyHRDFLFDEDGKWMLQGWKGRIICASACW 734
                              6655788************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.967336714IPR005202Transcription factor GRAS
PfamPF035141.1E-106362734IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MDPRFTGLPD SVSSFKVEDE FLFSSFQQSQ DFPNNYLDGS LPDFMGVPLI TPSPDSGYFP  60
PPAELDSPDD QDADPVLKYL NQILLEENID EKPSMFHDPI ALKAAEKSFY EALAKGPPSP  120
YQSHVNYNTE SPDSLFGNSC EPSTSSSTFG SSNTDPLWIV EPGESKSSFA SYPPDHSFHS  180
SFETTSERSN GSLDGFGGNM NVQMDSLSNA NVLANIFTDT ESILQFKRGM EEASKFLPAS  240
NQLVIDLDQY SLPPKTEELP RDTVIKAENI ERGSSDNSSR GKKHHHLEDD GFEEERSSKQ  300
SAVYVEEELS ELFDKVLLWN PNECVLTTRP PSEVDKGVPH NVPNSGKSRS KKQGATNEAV  360
DLRTLLISCA QSVAADDRRT ANEQLKQIRQ HSSPNGDANQ RLANVFANGL EARLAGTGTQ  420
LYAALAPKRI TAFEKLKAYQ VYMSACPFKK IAMTFANKMI HKISMGAPTL HVIDFGILYG  480
FQWPILIQHL SSRPGGPPKL RVTGIDLPQP GFRPAEMIEE TGRRLGKYCE RFGVPFEYNA  540
IATQNWETIK IEDLKLVSGE VVAVNCLYRF KNLLDETVAV DSPRDAVLSL IRKINPSIFV  600
HAVINGSYSA PFFVTRFREA LFHFSALFDM FDATIPRDDQ HRFHFEQEFY GRETLNVIAC  660
EGVERVERAE TYKQWQVRTM RAGFKLLPLN PELMTKLREK KAAGGYHRDF LFDEDGKWML  720
QGWKGRIICA SACWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-463477364380Protein SCARECROW
5b3h_A3e-463477363379Protein SCARECROW
5b3h_D3e-463477363379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019199265.10.0PREDICTED: scarecrow-like protein 14 isoform X2
RefseqXP_019199266.10.0PREDICTED: scarecrow-like protein 14 isoform X2
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A484ND690.0A0A484ND69_9ASTE; Uncharacterized protein
STRINGXP_009606498.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]