PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000549.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 563aa    MW: 64185.2 Da    PI: 7.2251
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000549.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS362.27.3e-1111865551374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lLle Aea ++ + + a+  L+ +++++sp+gd+ +R a+yf++ L+arla++++ely a++ ++ s    +e l+a+++++ 
  Itr_sc000549.1_g00008.1 186 LRSLLLESAEAAANYNGRTASDRLKLIRQHSSPYGDAAERTAHYFANSLEARLAGTGTELYTAFSRRRMS---AAEMLKAYQVYVT 268
                              6899*********************************************************999999998...9************ PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                              ++P+ k+s++ aN++I + + +++++HiiDf+i +G+QWp+++q ++ Rp+gpp+lRiTg++ p++g   +e++e tg+rLa++++
  Itr_sc000549.1_g00008.1 269 ACPFKKMSNIFANKTIGKLTRKATAIHIIDFGILYGFQWPCFIQGISLRPSGPPKLRITGIDFPQPGfrPAERVEDTGRRLANYCK 354
                              ******************************************************************9******************* PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              +++vpfe+++++akr+++++l+eL+++++E l+Vn+ ++l++++d+    +s+rd+vL+l+k+++P+ +++   + ++ns+ F  r
  Itr_sc000549.1_g00008.1 355 RFNVPFEYTAIAAKRWDSISLDELKTDREELLIVNCLYRLKNTPDD---ENSPRDAVLNLIKQTNPDFFIHGVINGKYNSSFFPSR 437
                              *****************************************99944...455778******************************* PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f eal ++s+lfd+l+a +pre++er ++Ere+ gr+i+n+vaceg+er+er et+++W+ r ++aGFk+v l+++++k++++ +r
  Itr_sc000549.1_g00008.1 438 FKEALFHFSSLFDMLDAAIPREDQERLVYEREIWGRDIMNIVACEGSERVERPETYKQWQVRNQRAGFKQVGLNQDVVKEVRAKVR 523
                              ************************************************************************************** PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                + + + v+e+s+++++gWk+r L ++S+W+
  Itr_sc000549.1_g00008.1 524 LRYHKDFLVDEHSNWMLQGWKGRVLCALSCWT 555
                              ***888*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.53160535IPR005202Transcription factor GRAS
PfamPF035142.5E-108186555IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MDHFDSNYNH QFTSTSSSSS SGDLSIESSS CGGDDSTPLE RDYFDGVLKY INQMLMEEED  60
LENRPCMLQD SLALQAAEKS FYEALTDRNF SDERNRKRDS YGDGEGRASK LVAGFTAEES  120
EQTEVYDKTL LCSANNPGFY SDPPWCHLDY SMEQTPRFTP AVTVQSKRGR PRAGEKRVGS  180
GKPVDLRSLL LESAEAAANY NGRTASDRLK LIRQHSSPYG DAAERTAHYF ANSLEARLAG  240
TGTELYTAFS RRRMSAAEML KAYQVYVTAC PFKKMSNIFA NKTIGKLTRK ATAIHIIDFG  300
ILYGFQWPCF IQGISLRPSG PPKLRITGID FPQPGFRPAE RVEDTGRRLA NYCKRFNVPF  360
EYTAIAAKRW DSISLDELKT DREELLIVNC LYRLKNTPDD ENSPRDAVLN LIKQTNPDFF  420
IHGVINGKYN SSFFPSRFKE ALFHFSSLFD MLDAAIPRED QERLVYEREI WGRDIMNIVA  480
CEGSERVERP ETYKQWQVRN QRAGFKQVGL NQDVVKEVRA KVRLRYHKDF LVDEHSNWML  540
QGWKGRVLCA LSCWTPVEKA MTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-471905548374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019199023.10.0PREDICTED: scarecrow-like protein 30
TrEMBLA0A068V2I60.0A0A068V2I6_COFCA; Uncharacterized protein
STRINGMigut.D02077.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.11e-161GRAS family protein