PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000549.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 630aa    MW: 71076.9 Da    PI: 6.0909
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000549.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.47.6e-1122576272374
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                              + lL++cA+a++s d++ ++++L+++++++sp+g+  +R+a+y+++AL+arl+++++ ly + +ps+ s    ++ l+a++++  +
  Itr_sc000549.1_g00006.1 257 RGLLTQCAQAMASYDTRTVTQILKKIRDHSSPQGNGHERMAFYLANALEARLNGTGTALYISNSPSNIS---AADILKAYQMYITA 339
                              679***************************************************999999877777777...9************* PP

                     GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171
                              sP+ k+s++ aN+ I + ++g+ r+HiiDf+i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g   +e++++tg+rL +++++
  Itr_sc000549.1_g00006.1 340 SPFKKVSNMFANKYIRKVAAGAPRLHIIDFGILYGFQWPCLIQGLSTRPGGPPRLRITGIDFPQPGfrPAERVKATGRRLDNYCKR 425
                              *****************************************************************9******************** PP

                     GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                              ++vpfef++ +a+++++++le+L+++++++l+Vn+  +l +++de+v  +s+rd vL+l+k+++P+v+++   +  +n++ F++rf
  Itr_sc000549.1_g00006.1 426 FHVPFEFKA-IAQKWDTIKLEDLEIDRDDVLVVNCLDRLGNVPDETVVPNSPRDIVLDLIKKINPDVFIHGVVNGTYNTPFFVTRF 510
                              *********.7*************************************************************************** PP

                     GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                               eal ++s+lfd +ea++pre+++r+  E++++gr+++nv+aceg+er+er et+++W+ r  +aGF+++pl+++++k +k  ++ 
  Itr_sc000549.1_g00006.1 511 REALFHFSSLFDIFEATVPREDKDRQLFEEMVFGRDAMNVIACEGSERVERPETYKQWQVRSLRAGFQQLPLDQEITKCVKDKVKS 596
                              *************************************************************************************9 PP

                     GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               + + ++++e+ ++l++gWk+r L +vS+W+
  Itr_sc000549.1_g00006.1 597 EYHKDFSIDEDGNWLLQGWKGRVLHAVSCWK 627
                              99888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.688230607IPR005202Transcription factor GRAS
PfamPF035142.6E-109257627IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MEALVQELFT TPNDFVYNHH SKPVNPSGQR FNLVERSAGE GEEGDYSDAI LKYINQMLME  60
EEDLENQPCM FRDCMALHAT EKYFSDVLNG SGDNSPLSIP QYDASFAGSS PSNCSSDLNN  120
GDSDLSPQFQ SSFNGSLFSQ YASRGAAIGL PNDSNVLSNL DMEVKESEGE NSPSKGKRNH  180
YYYSSDDGSA ETQRSNKHLA SYAPADEPEP LDMYDDVLLC SNKKNSKTEL QQKGQSKGGR  240
NRQGKKKEIQ KEFVDLRGLL TQCAQAMASY DTRTVTQILK KIRDHSSPQG NGHERMAFYL  300
ANALEARLNG TGTALYISNS PSNISAADIL KAYQMYITAS PFKKVSNMFA NKYIRKVAAG  360
APRLHIIDFG ILYGFQWPCL IQGLSTRPGG PPRLRITGID FPQPGFRPAE RVKATGRRLD  420
NYCKRFHVPF EFKAIAQKWD TIKLEDLEID RDDVLVVNCL DRLGNVPDET VVPNSPRDIV  480
LDLIKKINPD VFIHGVVNGT YNTPFFVTRF REALFHFSSL FDIFEATVPR EDKDRQLFEE  540
MVFGRDAMNV IACEGSERVE RPETYKQWQV RSLRAGFQQL PLDQEITKCV KDKVKSEYHK  600
DFSIDEDGNW LLQGWKGRVL HAVSCWKPIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-452606278375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019199217.10.0PREDICTED: scarecrow-like protein 30
SwissprotO809331e-168SCL9_ARATH; Scarecrow-like protein 9
SwissprotQ9XE581e-168SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2G3AXQ40.0A0A2G3AXQ4_CAPCH; Uncharacterized protein
STRINGSolyc01g100200.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-170SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]