PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000544.1_g00006.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 268aa MW: 29555 Da PI: 7.2018

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000544.1_g00006.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.8	2.1e-39	56	157	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyf.paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C aCk+lrrkC+++C++apyf p+e +++fa++hk+FGasnv+kll+++p ++r+da+ s+ yeAear++dP+yG+v++il+l+q Itr_sc000544.1_g00006.1 56 PCGACKLLRRKCVPECIFAPYFdPNEGTARFAAIHKVFGASNVSKLLTHIPMDRRPDAAISISYEAEARMSDPIYGCVSTILSLKQ 141 7*******************666669****************************************************** PP DUF260 86 qleqlkaelallkeel 101 q+++l+aela++k+++ Itr_sc000544.1_g00006.1 142 QVASLEAELAMVKTQI 157 *********99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.565	55	157	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.3E-38	56	154	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MDSSHNFNSS PSINSGVLNT GAYPQGGGAS SSTAAPRRNY TARRAALESG AAARGPCGAC 60 KLLRRKCVPE CIFAPYFDPN EGTARFAAIH KVFGASNVSK LLTHIPMDRR PDAAISISYE 120 AEARMSDPIY GCVSTILSLK QQVASLEAEL AMVKTQIMIS RFAAENNFLL QTPQQQQQLQ 180 QQQQQQQQQD QNAAIIMEQQ QPVYFNTSFD SNSLLNLTNF TTNYNYIGEA TPPNTQSFGP 240 NFQPPHPPLP DQEHSHYCPV HFTNHMFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-35	52	158	7	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-35	52	158	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019180250.1	1e-130	PREDICTED: LOB domain-containing protein 20-like
TrEMBL	A0A328DXL0	5e-69	A0A328DXL0_9ASTE; Uncharacterized protein
STRING	cassava4.1_028764m	4e-65	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	2e-55	LOB domain-containing protein 20