PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc000539.1_g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 338aa MW: 38937.8 Da PI: 4.5222 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 58.1 | 3.1e-18 | 6 | 132 | 4 | 128 |
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpkkvkaeekewyfFskrdkkya..tgkrknratk..sgyWk 84 G rF+P+d el++ L+ v g ++ + i++ d+y + ePw++ + + +ek+ yfF++ ++k++ +g+r nr++ +g+W+ Itr_sc000539.1_g00012.1 6 GDRFQPKDYELLTILLRF-VIGMGCHR-TNIRHEDLYgEKEPWEIF-RWDCNEKHQYFFTQLKRKSKsmKGSRINRTVGksAGTWH 88 88**********776655.55555555.469999999346*****5.77778999****9988877644799****7554589*** PP NAM 85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + k k+++++ +g+ g k+++ + ++ +p+ + +W+++e+ l Itr_sc000539.1_g00012.1 89 GQDKGKPIIDQkTGARLGYKRSFLYQNKMEPE-QDRQWLLKEFYL 132 *********9867788*******999877777.899******976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.593 | 3 | 161 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.09E-19 | 5 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-10 | 6 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 338 aa Download sequence Send to blast |
MEKELGDRFQ PKDYELLTIL LRFVIGMGCH RTNIRHEDLY GEKEPWEIFR WDCNEKHQYF 60 FTQLKRKSKS MKGSRINRTV GKSAGTWHGQ DKGKPIIDQK TGARLGYKRS FLYQNKMEPE 120 QDRQWLLKEF YLNDEAIMKA TETYPKLEDT KDFVLCRLKR KKRAGGEPLE IKDVPVETIV 180 QILLHGAADS TATLPTIEEN FDNHCYMDPT VTPTATLPTT EENFDNNYYI NPTEEILAQV 240 EPQPSVLGEN NGGEQSIQGE NNGGDDMSLY FDCNILNEDP EMLAMQQRWL EGNNDICIDD 300 LTGPSLEEIL QELAAAPLPQ PSMQASEKDD YTTVFYPF |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019179039.1 | 5e-61 | PREDICTED: uncharacterized protein LOC109174249 |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1024 | 13 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G07680.2 | 7e-14 | NAC domain containing protein 80 |