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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Itr_sc000531.1_g00006.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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| Family |
BBR-BPC |
| Protein Properties |
Length: 326aa MW: 36480.5 Da PI: 9.8425 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc000531.1_g00006.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 382 | 9.6e-117 | 1 | 326 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkgyye......pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalver 77
mdd g+re r+k ++ +++ +q+m+++aerda+i+ernlalsekkaa+aerd a lqrd+a+aern+a++er
Itr_sc000531.1_g00006.1 1 MDDGGHREngRHKL--PqgqwlmQHqPTM-----KQIMAIMAERDAAIQERNLALSEKKAALAERDTAILQRDTAIAERNNAIMER 79
89999976565553..1111222222344.....5*************************************************** PP
GAGA_bind 78 dnkllalllvensla....salpvgvqvlsgtksidslqq..lsepqledsavelreeeklealpieeaaeeakekkkkkkrqrak 157
dn++++l+++e s++ s +p+g+q+++g+k++++ qq +++p++ + +++ r++++ +++p++ a+e + +++k+ ++ak
Itr_sc000531.1_g00006.1 80 DNAIATLQYHESSMNtgsmSPCPPGCQISRGVKHMHHPQQhvQHQPHMVEATYNSRDMHMGDTMPMSPPAPEPAKPRRNKRAKEAK 165
************999999899******************9744559*******************998887776666665444443 PP
GAGA_bind 158 kpkekkakkkkkksekskkkvkkesader.......................skaekksidlvlngvslDestlPvPvCsCtGalr 220
+ ++k k++k+ k+vkke++d + sk ++k++dl+ln+v++Dest+PvPvCsCtGalr
Itr_sc000531.1_g00006.1 166 PATSSK------KTSKPSKRVKKEGEDLNktmwkgtqemgsasdelnrqmcvSKPDWKDQDLGLNQVAFDESTMPVPVCSCTGALR 245
332222......223333444444444222445555678999******************************************** PP
GAGA_bind 221 qCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
CYkWGnGGWqS+CCtt++S+yPLP+++++r+aRi+grKmS++af+klL++LaaeG+dlsnpvDLk+hWAkHGtn+++ti+
Itr_sc000531.1_g00006.1 246 PCYKWGNGGWQSSCCTTNLSMYPLPTVPNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKEHWAKHGTNRYITIK 326
********************************************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 326 aa
Download sequence Send
to blast |
MDDGGHRENG RHKLPQGQWL MQHQPTMKQI MAIMAERDAA IQERNLALSE KKAALAERDT 60
AILQRDTAIA ERNNAIMERD NAIATLQYHE SSMNTGSMSP CPPGCQISRG VKHMHHPQQH 120
VQHQPHMVEA TYNSRDMHMG DTMPMSPPAP EPAKPRRNKR AKEAKPATSS KKTSKPSKRV 180
KKEGEDLNKT MWKGTQEMGS ASDELNRQMC VSKPDWKDQD LGLNQVAFDE STMPVPVCSC 240
TGALRPCYKW GNGGWQSSCC TTNLSMYPLP TVPNKRHARI GGRKMSGSAF TKLLSRLAAE 300
GHDLSNPVDL KEHWAKHGTN RYITIK
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
