PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000530.1_g00017.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 272aa    MW: 30240.5 Da    PI: 6.0502
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000530.1_g00017.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1051.2e-3261145166
                      TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................s 66 
                              a+g+kdrhsk++T++g RdRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++ak++i +l++                    s
  Itr_sc000530.1_g00017.1  61 ATGRKDRHSKVCTARGTRDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLMKEAKAEIEALNNApinqtglkeeegnilvqncS 145
                              589*************************************************************955555444444444443331 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-3062130IPR005333Transcription factor, TCP
PROSITE profilePS5136930.56364122IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDPVLHEGED DSEEEEEQCR RRKGAIMADG FEKETQRVKA KKRGKGGEVM MNVNGGRIVR  60
ATGRKDRHSK VCTARGTRDR RVRLSPNTAI QFYDVQDRLG YDRPSKAIDW LMKEAKAEIE  120
ALNNAPINQT GLKEEEGNIL VQNCSNNPSF SSIFPIESNN LHPNCVAFPE ASSSSSSIFF  180
FDDQRLISWN VCPENGKVAE EGSFTPAQNQ VFSQREPLQS SFFPHTTFSY AAAMGGGFGD  240
NNELSGMSTA AAEEHHHLAS GRPTTSLLDY HH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2069122154Putative transcription factor PCF6
5zkt_B3e-2069122154Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13945AKKRGKG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019171079.11e-102PREDICTED: transcription factor TCP10-like
TrEMBLA0A2G9I7593e-45A0A2G9I759_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000591178e-41(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.16e-36TCP domain protein 10