PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000521.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NAC | ||||||||
Protein Properties | Length: 183aa MW: 20686.2 Da PI: 8.7378 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.1 | 1.1e-33 | 25 | 152 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratk..sgy 82 lppG F Ptd+el+++yLk+k++++k+++ +i+++diy+++P++L+ + ++++ + + yfF+ ++k++ g+r ra+ +gy Itr_sc000521.1_g00006.1 25 LPPGHGFYPTDQELITKYLKHKAQNQKIHA-GIINDLDIYNYHPEELEaAnALNHWNGRRYFFTAFKRKTKDGTRGDRAVGggKGY 109 79***************************9.99**************8322332233356******************8776699* PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wka+ +++++ +g ++g+k+ Lvf+ + +g+kt+W+m e+r Itr_sc000521.1_g00006.1 110 WKASQAREPLKDGGGVVIGTKQPLVFH---DGEGKKTSWLMSEFRY 152 ************9**************...567788********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.23E-34 | 23 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.648 | 25 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-19 | 26 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MAASCSAQRP NGYGDDDSDE WKRSLPPGHG FYPTDQELIT KYLKHKAQNQ KIHAGIINDL 60 DIYNYHPEEL EAANALNHWN GRRYFFTAFK RKTKDGTRGD RAVGGGKGYW KASQAREPLK 120 DGGGVVIGTK QPLVFHDGEG KKTSWLMSEF RYPSNVDPFP LYNQVLKVAF KCEPVLMCEP 180 ANY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-22 | 24 | 151 | 14 | 139 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019186512.1 | 6e-91 | PREDICTED: transcription factor JUNGBRUNNEN 1-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15567 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 5e-25 | NAC domain containing protein 32 |