PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000519.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family SBP
Protein Properties Length: 350aa    MW: 37684.9 Da    PI: 8.866
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000519.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1352.3e-4257132176
                              --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                      SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                              +CqvegC+adlse+k y+++hkvC +hsk+p+v+vsgleqrfCqqCsrfh+lsefD+ krsCrrrLa+hnerrrk+
  Itr_sc000519.1_g00008.1  57 RCQVEGCKADLSEVKAYYSKHKVCGMHSKSPKVIVSGLEQRFCQQCSRFHQLSEFDQVKRSCRRRLAGHNERRRKP 132
                              6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.3E-3550119IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.07755132IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-4056136IPR004333Transcription factor, SBP-box
PfamPF031106.4E-3258131IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MELGSSSSST STSADSSSDG LKFGKKVYFE DAALPAVVPS PAKRGRTAAS QGGQPPRCQV  60
EGCKADLSEV KAYYSKHKVC GMHSKSPKVI VSGLEQRFCQ QCSRFHQLSE FDQVKRSCRR  120
RLAGHNERRR KPPLGSILST HYGTLSPSMF VTGNNGKTGS FVMDFASYPY PGGKASWHPS  180
TWDSQTTGAG NFLQQPWQRS SEDPPPKFLL LGSDAATARA TYPGPSVVPC GECFTGVSDS  240
TRALSLLSNS NQPWGSRNQL PSGLGVNSLL NTDGTLAVHP SGSHAAVINE FSGPWGFKGN  300
QATTSSDKII PDNHYSGELE MAHQQTGRAY MGMEYSTGYD SSVQNVHWTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-32581311184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019166257.10.0PREDICTED: squamosa promoter-binding-like protein 9 isoform X1
TrEMBLA0A1J6IJ461e-128A0A1J6IJ46_NICAT; Squamosa promoter-binding-like protein 9
STRINGXP_009792000.11e-126(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45712241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.19e-60squamosa promoter binding protein-like 9