PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000518.1_g00020.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 342aa    MW: 38587.8 Da    PI: 6.5262
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000518.1_g00020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_121.84.1e-07196253563
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                              k e +++k   +A rsR RK++ i+eLe+ v+ ++ e +a+ +ele l ++   l +e+
  Itr_sc000518.1_g00020.1 196 KTEAKRAK-QQSAHRSRVRKLQHIAELERTVQFMQVEESAMSSELEFLDQQNLILSMEN 253
                              66667777.579************************************99988777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0013196255IPR004827Basic-leucine zipper domain
CDDcd147032.27E-12199246No hitNo description
SuperFamilySSF579593.75E-6204249No hitNo description
Gene3DG3DSA:1.20.5.1702.0E-4205249No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MESSNKSSGF STFAYTNGKN PASFYPFVSD SSSYIDSLPV ASRGKQRTDE VAGKNYQRSL  60
SDNLLMEEEP LWLEDLLSEP VTMAHICHRR SASDSYAYLG AAAEQLHVNK ERDLNDLTAR  120
APFDVSTFVY SKDLNQVSSD TTPNSSDETI HKASYEPNGG GPLSSEKHNK EEPNMQNPES  180
SSEKANGSQQ KSCMSKTEAK RAKQQSAHRS RVRKLQHIAE LERTVQFMQV EESAMSSELE  240
FLDQQNLILS MENRALRQRL ESLSQEFLIK RMEQEMLERE LGRLQAMYQL QRQQPVPQQP  300
SKHRQSNSRD LLEAQFANLS LKNNEVSSGR AAGSVSRSVR IP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019184477.10.0PREDICTED: uncharacterized protein At4g06598-like isoform X1
RefseqXP_019184478.10.0PREDICTED: uncharacterized protein At4g06598-like isoform X1
TrEMBLA0A484M1P21e-107A0A484M1P2_9ASTE; Uncharacterized protein
STRINGPGSC0003DMT4000240033e-97(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114452023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.28e-54bZIP family protein