PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000518.1_g00018.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 268aa    MW: 29226.9 Da    PI: 8.8938
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000518.1_g00018.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-171461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd++l+++++ +G g+W++ ++  g+ R++k+c++rw +yl
  Itr_sc000518.1_g00018.1 14 KGAWTKEEDQRLINYIRSHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                             79******************************99************97 PP
2Myb_DNA-binding59.47.9e-1967111147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg++T+eEd+l+++++ +lG++ W++Ia++++ gRt++++k++w+++
  Itr_sc000518.1_g00018.1  67 RGNFTEEEDDLIIKLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
                              89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.133961IPR017930Myb domain
SMARTSM007171.4E-131363IPR001005SANT/Myb domain
SuperFamilySSF466898.07E-3013108IPR009057Homeodomain-like
PfamPF002491.0E-151461IPR001005SANT/Myb domain
CDDcd001671.68E-101661No hitNo description
PROSITE profilePS5129429.42562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2865116IPR009057Homeodomain-like
SMARTSM007172.3E-1866114IPR001005SANT/Myb domain
PfamPF002491.6E-1767111IPR001005SANT/Myb domain
CDDcd001677.29E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0090378Biological Processseed trichome elongation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLINYIR SHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDDLIIK LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLLSRG  120
LDPQTHRPIN AAAAGGGGGS SAAKDICLDF RNAAAPAKSS NEKATLSLSQ EDTKCNSGTT  180
TEESQSHQQQ KDDQTALNLG LSIGLSTAAE TPSSSNTAES VAPPQAPPSA ATVGYAAMTQ  240
SVCLCWQLGW SPSGKLCTKC HNSYKWFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-30141167108B-MYB
1h8a_C6e-301311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00053PBMTransfer from AT1G22640Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019184475.11e-161PREDICTED: transcription repressor MYB6-like
SwissprotP813955e-95MYB30_ANTMA; Myb-related protein 330
TrEMBLA0A484MRB11e-117A0A484MRB1_9ASTE; Uncharacterized protein
STRINGXP_009767902.11e-113(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.12e-89myb domain protein 6
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]