PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000509.1_g00016.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 789aa MW: 89911.8 Da PI: 6.1387

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000509.1_g00016.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.6	4.5e-28	79	174	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 fYn YA++vGFs+r+s s++s+r+g i++r fvC k+g+r ++ k + +r+r+etr+gCka+l vk ++ +gkw v+ + Itr_sc000509.1_g00016.1 79 FYNCYARRVGFSTRVSMSRRSRRDGAIIQRSFVCAKQGFRVDKAKPscdgdGGRVKRPRVETRVGCKAMLLVKIQEeSGKWIVAGF 164 9***************************************999999998889999*************999***** PP FAR1 82 eleHnHelap 91 eHnHel+p Itr_sc000509.1_g00016.1 165 IREHNHELVP 174 ******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-26	79	174	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-33	295	387	IPR018289	MULE transposase domain
Pfam	PF04434	1.7E-9	563	608	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.62	575	611	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.6E-6	586	613	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 789 aa Download sequence Send to blast
MEFEPMSMGN DVIEFDMIGI GGGVVDGAID IEHPIEDDDD DDRGGGAGVS VEIHARDGDM 60 NLEPCEGMEF ESEEAAKAFY NCYARRVGFS TRVSMSRRSR RDGAIIQRSF VCAKQGFRVD 120 KAKPSCDGDG GRVKRPRVET RVGCKAMLLV KIQEESGKWI VAGFIREHNH ELVPPDKVHC 180 LRSHRHVSGA AKALIDTLQG AGMGASGIMS ALIKEYGGIN NIGFTERDCR NYMKSSKQRT 240 LGGDPKILLD YLKQKHAENP AFLYAVQGDE DQCMSNVFWA DPNARNSYTY FGDTVTFDTT 300 YRSNRYRLPF AMFTGVNHHR QPVLFGCAFL PNESEESFVW LFKTWLTAMS GKPPVSITTD 360 HDRLIRLAVT QVFPETRHRF CMWHIFKECQ EKLSDVLSKH PNFEAEFYKC VSVTESIEEF 420 ESCWLSLIDR YDLRENEWLK TIFADRGQWV PVYLRNTFFA EMSMTQHSDS LNSYFDGYMN 480 ASTTLQQFVK QYEKALESRY EKEVKADYDS INTAPVLKTP SPMEKQASEI YTRKLFAKFQ 540 GELVETLGFL ATKVEDQELI TTYQVSKFGE SQKSYLVRYN VGDMKALCSC QMFEFCGILC 600 RHILTVFRIT NLLTLPSQYI LKRWTKNAKS SVMLDEGTNN SLNSCRESLT QRYNNLQNEA 660 LRYVDESAGD EEIYNVALDA LREAANKVAI AKRNSDKLSI INGPGDIQES TISLSHANTR 720 SQDHQLDPEK PLPLDEQDRK IQSLSRQLEH AEQKCEAYRA NLLSILKDIE QQKLQLMVKV 780 QNIKFGLKD

Sequence ? help Back to Top

Protein Sequence Length: 789 aa Download sequence Send to blast

MEFEPMSMGN DVIEFDMIGI GGGVVDGAID IEHPIEDDDD DDRGGGAGVS VEIHARDGDM  60
NLEPCEGMEF ESEEAAKAFY NCYARRVGFS TRVSMSRRSR RDGAIIQRSF VCAKQGFRVD  120
KAKPSCDGDG GRVKRPRVET RVGCKAMLLV KIQEESGKWI VAGFIREHNH ELVPPDKVHC  180
LRSHRHVSGA AKALIDTLQG AGMGASGIMS ALIKEYGGIN NIGFTERDCR NYMKSSKQRT  240
LGGDPKILLD YLKQKHAENP AFLYAVQGDE DQCMSNVFWA DPNARNSYTY FGDTVTFDTT  300
YRSNRYRLPF AMFTGVNHHR QPVLFGCAFL PNESEESFVW LFKTWLTAMS GKPPVSITTD  360
HDRLIRLAVT QVFPETRHRF CMWHIFKECQ EKLSDVLSKH PNFEAEFYKC VSVTESIEEF  420
ESCWLSLIDR YDLRENEWLK TIFADRGQWV PVYLRNTFFA EMSMTQHSDS LNSYFDGYMN  480
ASTTLQQFVK QYEKALESRY EKEVKADYDS INTAPVLKTP SPMEKQASEI YTRKLFAKFQ  540
GELVETLGFL ATKVEDQELI TTYQVSKFGE SQKSYLVRYN VGDMKALCSC QMFEFCGILC  600
RHILTVFRIT NLLTLPSQYI LKRWTKNAKS SVMLDEGTNN SLNSCRESLT QRYNNLQNEA  660
LRYVDESAGD EEIYNVALDA LREAANKVAI AKRNSDKLSI INGPGDIQES TISLSHANTR  720
SQDHQLDPEK PLPLDEQDRK IQSLSRQLEH AEQKCEAYRA NLLSILKDIE QQKLQLMVKV  780
QNIKFGLKD

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019177388.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_019177389.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2N9J6X6	0.0	A0A2N9J6X6_FAGSY; Uncharacterized protein
STRING	XP_009775261.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]