PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000509.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 675aa MW: 77085.6 Da PI: 6.6549

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000509.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.1	2.7e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWk Itr_sc000509.1_g00002.1 6 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWK 90 79**************************.99***********6434555777************************ PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atgkd++v s + + vg+kktLv+y+grap+g +tdWvmheyrl Itr_sc000509.1_g00002.1 91 ATGKDRKVNS-QMRSVGMKKTLVYYRGRAPHGARTDWVMHEYRL 133 ******.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-63	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.709	6	156	IPR003441	NAC domain
Pfam	PF02365	6.4E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QMRSVGMKKT LVYYRGRAPH 120 GARTDWVMHE YRLDERECEI QNGLQDAYAL CRVFKKSLTN TGPKMGDHYV SAASDRSSSM 180 DIYSEGRCEE MESSNYAMAA PPSSAAASCS SMAAAAVHGS PFHHVAAAGP STNDDKWMQY 240 LSDEAFSFHT PPPSSLPNYA TMPYPPSKVD IALECARLQH RFMLPQLEVQ DFPHVVGHVD 300 ARMIPHHHHQ SSFVNHDNNP DIVQEILSVA QASQDLMNQD GWGGGGGGYA PTAADDDFSF 360 LLPHNGSQFQ DMGNFRFMDQ LREDQNGGRN IEITDFGDEF KPDRMVENLR WVGMSDKDLE 420 KTLLEDYKAV PIENVSGFNR EGHEDHGESS QHNNFSDIND FSLGFDNNHD HNHNNNFLED 480 FSDSPSFEVY EKVEVKHGMF IASRQAAKTL YHQVVPSTTV RIHRNLLVPM QSATFPVSKF 540 EASRAFNNNN NIVLDKFIAF SRKMLIGIIK LTRPWRRMVS TLVGVIAILH TCWVYFGELL 600 LEAQEKNYYY CHFPREKREL SGDYEWESLK KNKDSSIADK KNPRMTTRVD KTTWPYLTLV 660 LALSTIWLHQ NVTFF

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QMRSVGMKKT LVYYRGRAPH  120
GARTDWVMHE YRLDERECEI QNGLQDAYAL CRVFKKSLTN TGPKMGDHYV SAASDRSSSM  180
DIYSEGRCEE MESSNYAMAA PPSSAAASCS SMAAAAVHGS PFHHVAAAGP STNDDKWMQY  240
LSDEAFSFHT PPPSSLPNYA TMPYPPSKVD IALECARLQH RFMLPQLEVQ DFPHVVGHVD  300
ARMIPHHHHQ SSFVNHDNNP DIVQEILSVA QASQDLMNQD GWGGGGGGYA PTAADDDFSF  360
LLPHNGSQFQ DMGNFRFMDQ LREDQNGGRN IEITDFGDEF KPDRMVENLR WVGMSDKDLE  420
KTLLEDYKAV PIENVSGFNR EGHEDHGESS QHNNFSDIND FSLGFDNNHD HNHNNNFLED  480
FSDSPSFEVY EKVEVKHGMF IASRQAAKTL YHQVVPSTTV RIHRNLLVPM QSATFPVSKF  540
EASRAFNNNN NIVLDKFIAF SRKMLIGIIK LTRPWRRMVS TLVGVIAILH TCWVYFGELL  600
LEAQEKNYYY CHFPREKREL SGDYEWESLK KNKDSSIADK KNPRMTTRVD KTTWPYLTLV  660
LALSTIWLHQ NVTFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-54	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-54	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-54	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-54	1	156	12	165	NO APICAL MERISTEM PROTEIN
4dul_A	2e-54	1	156	12	165	NAC domain-containing protein 19
4dul_B	2e-54	1	156	12	165	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019177519.1	0.0	PREDICTED: NAC domain-containing protein 86 isoform X2
TrEMBL	A0A314L481	0.0	A0A314L481_NICAT; Nac domain-containing protein 45
STRING	XP_009790763.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1495	23	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-144	NAC domain containing protein 28