PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000508.1_g00025.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRF
Protein Properties Length: 366aa    MW: 39717.2 Da    PI: 8.1661
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000508.1_g00025.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC82.63.5e-26145188144
                      WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                              d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e
  Itr_sc000508.1_g00025.1 145 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVE 188
                              79***************************************987 PP
2QLQ46.31.3e-1669104136
                      QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                              s+F+  Q+q+L+ Q+l++++++a++PvPpeLl  ++
  Itr_sc000508.1_g00025.1  69 SYFSLGQWQELELQALIFRHMIAGAPVPPELLHLVK 104
                              789****************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.6E-869105IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.99670105IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.7E-1271103IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.686145189IPR014977WRC domain
PfamPF088792.1E-22146188IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDFDLKQWRN QEESEAKVPR LVLDLHGGGG SSSSALPLFV SEPPTSKLSA YSSDSTPTAT  60
TKFPRMGGSY FSLGQWQELE LQALIFRHMI AGAPVPPELL HLVKKSLFNS ASPYYFPHPL  120
HHYPHYHPAA APLMQAGYWG RAAMDPEPGR CRRTDGKKWR CSRDVVAGQK YCERHMHRGR  180
NRSRKPVEIP TPTPPTAAGG LKTNPTADAQ PLSGGRDAPP HFTLSANAPP SSSIDLFHLS  240
QRHHGEPIME NSGPLEAQND GPSGGGGQTL RHFFDDWPRP LEETESSSTA TNLSISIPGN  300
ASSDFSLKLA TGPPLGNIER TTAWGTNQGG PLAEALRSST SNSSPTSVLH QLQRNSTTSE  360
TSFITS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152873.10.0PREDICTED: growth-regulating factor 3-like isoform X1
TrEMBLA0A1J6J7F41e-137A0A1J6J7F4_NICAT; Growth-regulating factor 3
STRINGXP_009771979.11e-131(Nicotiana sylvestris)
STRINGXP_009783589.11e-131(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32832138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.15e-67growth-regulating factor 4