PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000501.1_g00026.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | TCP | ||||||||
Protein Properties | Length: 313aa MW: 34744.5 Da PI: 7.3604 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 104.5 | 1.7e-32 | 60 | 191 | 2 | 101 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................... 65 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak +i+el+ + Itr_sc000501.1_g00026.1 60 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKNEIDELPPLqlpptgifnpnlqqwlcstkeg 145 689*************************************************************7777777777777777766666 PP TCP 66 ......ssssasec....eaesssssasnsssgkaaksaakskksq 101 + +s++e ++++++ ++s++++ ++++ + s++s+ Itr_sc000501.1_g00026.1 146 lpleprDHKSSKEIaeggDDDDRQDQQSHHHEIDHNNLLPRSHNSS 191 6666552222222233332222222222222222222222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.8E-30 | 62 | 190 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.817 | 62 | 120 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MITTEVDFSA TTTKPEGTNT TTSDHRNNVN LKVVPAATPT PTSSWTRLKD PRIVRVSRAF 60 GGKDRHSKVC TVRGLRDRRV RLSVPTAIQL YDLQDRLGLN QPSKVVDWLL NAAKNEIDEL 120 PPLQLPPTGI FNPNLQQWLC STKEGLPLEP RDHKSSKEIA EGGDDDDRQD QQSHHHEIDH 180 NNLLPRSHNS SSSSSSLPNL MMGNAAQFNS FLRWDPSSSL SLSHHQGGVS EDFHNFNNNV 240 LPSGLAHSFF HPQSIGGGGG GDRQINFQML RPPPPIHDFT THSLRPLRFL APHNHTGAEP 300 ASKENNNEFH STS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-19 | 67 | 121 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-19 | 67 | 121 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019157046.1 | 1e-143 | PREDICTED: transcription factor TCP13-like isoform X2 | ||||
TrEMBL | A0A2J6LV19 | 8e-70 | A0A2J6LV19_LACSA; Uncharacterized protein | ||||
STRING | XP_009623901.1 | 5e-64 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 6e-46 | plastid transcription factor 1 |