PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000501.1_g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 245aa MW: 27476.6 Da PI: 7.5807 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61 | 2.5e-19 | 12 | 59 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll d+v ++G g+W+++ar+ g++R +k+c++rw +yl Itr_sc000501.1_g00011.1 12 KGPWTPEEDKLLGDYVSLHGEGRWSSVARCAGLNRNGKSCRLRWVNYL 59 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.3e-16 | 65 | 109 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++ Itr_sc000501.1_g00011.1 65 RGHISPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 109 67779*****************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.221 | 7 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.58E-31 | 9 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-15 | 11 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-17 | 12 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-23 | 13 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.30E-12 | 14 | 59 | No hit | No description |
PROSITE profile | PS51294 | 19.158 | 64 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 4.7E-14 | 64 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-14 | 65 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-24 | 67 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.22E-10 | 69 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MVGAAEKAGW RKGPWTPEED KLLGDYVSLH GEGRWSSVAR CAGLNRNGKS CRLRWVNYLR 60 PGLKRGHISP QEEGIIIELH ALWGNKWSTI ARYLPGRTDN EIKNYWRTHF KKKPAAGKTS 120 EKQDRRKNRR KRNEEKVIND TKPQETMSNN DSSCITAAAA PMGDNNQLGG TSANTTTTSY 180 HEDIESWVDS FAMDMDGLWG GGLWNLDDDD SYPEAALLEQ GHVIQNPCGF GADHAVNLWN 240 GGFIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-23 | 12 | 113 | 7 | 107 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 131 | KKKPAAGKTSEKQDRRKNRRKR |
2 | 111 | 126 | KKPAAGKTSEKQDRRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00388 | DAP | Transfer from AT3G30210 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019176345.1 | 1e-140 | PREDICTED: myb-related protein 340-like | ||||
TrEMBL | A0A2G3D907 | 8e-87 | A0A2G3D907_CAPCH; Transcription factor MYB59 | ||||
STRING | XP_009610111.1 | 1e-85 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 1e-68 | myb domain protein 121 |